Laplacian of nullspace of trace in Q for internal dof functionals TNT quadrilateral #32875

Workflow file for this run

	name: DOLFINx CI

	on:
	push:
	branches:
	- "**"
	tags:
	- "v*"
	pull_request:
	branches:
	- main
	merge_group:
	branches:
	- main
	workflow_dispatch:
	inputs:
	ffcx_ref:
	description: "FFCx branch or tag"
	default: "main"
	type: string
	basix_ref:
	description: "Basix branch or tag"
	default: "main"
	type: string
	ufl_ref:
	description: "UFL branch or tag"
	default: "main"
	type: string

	jobs:
	fenicsx-refs:
	uses: ./.github/workflows/fenicsx-refs.yml

	lint:
	runs-on: ubuntu-latest
	name: Lint
	steps:
	- name: Checkout DOLFINx
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.12'
	- name: Install linting tools
	run: pip install clang-format cmake-format[YAML] mypy ruff
	- name: ruff .py files in C++ code
	run: \|
	cd cpp/
	ruff check .
	ruff format --check .
	- name: ruff Python interface checks
	run: \|
	cd python/
	ruff check .
	ruff format --check .
	- name: mypy checks
	run: \|
	cd python/
	mypy dolfinx
	mypy demo
	mypy test
	- name: clang-format C++ checks (non-blocking)
	continue-on-error: true
	run: \|
	cd cpp
	clang-format --version
	find . -type f $ -name ".cpp" -o -name ".h" $ \| xargs clang-format --dry-run --Werror
	- name: clang-format Python binding checks (non-blocking)
	continue-on-error: true
	run: \|
	cd python/dolfinx/wrappers
	clang-format --version
	find . -type f $ -name ".cpp" -o -name ".h" $ \| xargs clang-format --dry-run --Werror
	- name: cmake-format (non-blocking)
	continue-on-error: true
	run: \|
	find . -type f $ -name ".cmake" -o -name ".cmake.in" -o -name "CMakeLists.txt" $ \| xargs cmake-format --check

	build:
	runs-on: ubuntu-latest
	needs: [fenicsx-refs, lint]
	env:
	OMPI_ALLOW_RUN_AS_ROOT: 1
	OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
	PRTE_MCA_rmaps_default_mapping_policy: :oversubscribe # Newer OpenMPI
	OMPI_MCA_rmaps_base_oversubscribe: true # Older OpenMPI

	name: Build and test
	steps:
	- uses: actions/checkout@v4

	- name: Install dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install catch2 cmake g++ libboost-dev libhdf5-mpi-dev libparmetis-dev libpugixml-dev libspdlog-dev mpi-default-dev ninja-build pkg-config
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"

	- name: Install Python build dependencies
	run: \|
	pip install --upgrade -r python/build-requirements.txt

	- name: Install FEniCS Python components (default branches/tags)
	if: github.event_name != 'workflow_dispatch'
	run: \|
	pip install git+https://github.com/fenics/ufl.git@${{ needs.fenicsx-refs.outputs.ufl_ref }}
	pip install git+https://github.com/fenics/basix.git@${{ needs.fenicsx-refs.outputs.basix_ref }}
	pip install git+https://github.com/fenics/ffcx.git@${{ needs.fenicsx-refs.outputs.ffcx_ref }}
	- name: Install FEniCS Python components
	if: github.event_name == 'workflow_dispatch'
	run: \|
	pip install git+https://github.com/FEniCS/ufl.git@${{ github.event.inputs.ufl_ref }}
	pip install git+https://github.com/FEniCS/basix.git@${{ github.event.inputs.basix_ref }}
	pip install git+https://github.com/FEniCS/ffcx.git@${{ github.event.inputs.ffcx_ref }}

	- name: Configure and install C++
	run: \|
	cmake -G Ninja -DDOLFINX_ENABLE_PETSC=false -DCMAKE_BUILD_TYPE=Developer -B build -S cpp/
	cmake --build build
	sudo cmake --install build
	- name: Build C++ unit tests
	run: \|
	cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build/test/ -S cpp/test/
	cmake --build build/test --parallel 3
	- name: Run C++ unit tests (serial)
	run: \|
	cd build/test
	ctest -V --output-on-failure -R unittests
	- name: Run C++ unit tests (MPI)
	run: \|
	cd build/test
	mpirun -n 3 ctest -V --output-on-failure -R unittests

	- name: Build Python interface
	run: \|
	pip install --check-build-dependencies --no-build-isolation --config-settings=cmake.build-type="Debug" 'python/[test]'
	python -c "from mpi4py import MPI; import dolfinx; assert not dolfinx.has_petsc4py"

	- name: Run demos (Python, serial)
	run: \|
	pip install pytest-xdist
	python -m pytest -n auto -m serial --durations=10 python/demo/test.py
	- name: Run demos (Python, MPI (np=3))
	run: python -m pytest -m mpi --num-proc=3 python/demo/test.py
	- name: Run unit tests
	run: python -m pytest -n auto -m "not petsc4py and not adios2" python/test/unit
	- name: Run unit tests (MPI, np=3)
	run: mpirun -np 3 python -m pytest -m "not petsc4py and not adios2" python/test/unit

	build-with-petsc:
	runs-on: ubuntu-latest
	needs: [fenicsx-refs, lint]
	strategy:
	matrix:
	petsc_arch: [linux-gnu-real32-32, linux-gnu-real64-32, linux-gnu-complex64-32, linux-gnu-complex128-32, linux-gnu-real64-64, linux-gnu-complex128-64]
	docker_image: ["ghcr.io/fenics/test-env:current-openmpi"]
	include:
	- docker_image: "ghcr.io/fenics/test-env:current-mpich"
	petsc_arch: linux-gnu-real64-32
	- docker_image: "ghcr.io/fenics/test-env:current-mpich"
	petsc_arch: linux-gnu-complex128-32
	container: ${{ matrix.docker_image }}
	env:
	PETSC_ARCH: ${{ matrix.petsc_arch }}
	OMPI_ALLOW_RUN_AS_ROOT: 1
	OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
	PRTE_MCA_rmaps_default_mapping_policy: :oversubscribe

	name: Build and test (${{ matrix.petsc_arch }}, ${{ matrix.docker_image }})
	steps:
	- uses: actions/checkout@v4

	- name: Install FEniCS Python components (default branches/tags)
	if: github.event_name != 'workflow_dispatch'
	run: \|
	pip install git+https://github.com/FEniCS/ufl.git@${{ needs.fenicsx-refs.outputs.ufl_ref }}
	pip install git+https://github.com/FEniCS/basix.git@${{ needs.fenicsx-refs.outputs.basix_ref }}
	pip install git+https://github.com/FEniCS/ffcx.git@${{ needs.fenicsx-refs.outputs.ffcx_ref }}

	- name: Install FEniCS Python components
	if: github.event_name == 'workflow_dispatch'
	run: \|
	pip install git+https://github.com/FEniCS/ufl.git@${{ github.event.inputs.ufl_ref }}
	pip install git+https://github.com/FEniCS/basix.git@${{ github.event.inputs.basix_ref }}
	pip install git+https://github.com/FEniCS/ffcx.git@${{ github.event.inputs.ffcx_ref }}

	- name: Configure, build and install C++ library
	run: \|
	cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -DDOLFINX_ENABLE_ADIOS2=true -DDOLFINX_ENABLE_KAHIP=true -DDOLFINX_ENABLE_PARMETIS=false -DDOLFINX_ENABLE_PETSC=true -DDOLFINX_ENABLE_SCOTCH=true -DDOLFINX_ENABLE_SLEPC=true -B build -S cpp/
	cmake --build build
	cmake --install build

	- name: Build C++ unit tests
	run: \|
	cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build/test/ -S cpp/test/
	cmake --build build/test --parallel 3
	- name: Run C++ unit tests (serial)
	run: \|
	cd build/test
	ctest -V --output-on-failure -R unittests
	- name: Run C++ unit tests (MPI)
	run: \|
	cd build/test
	mpirun -n 3 ctest -V --output-on-failure -R unittests
	- name: Build and run C++ regression tests (serial and MPI (np=2))
	run: \|
	cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build/demo/ -S cpp/demo/
	cmake --build build/demo --parallel 3
	cd build/demo
	ctest -V -R demo -R serial
	ctest --output-on-failure -V -R demo -R mpi_2

	- name: Install Python build dependencies
	run: pip install -r python/build-requirements.txt

	- name: Build Python interface
	run: \|
	pip install --check-build-dependencies --no-build-isolation --config-settings=cmake.build-type="Debug" 'python/[test]'
	python -c "from mpi4py import MPI; import dolfinx; assert dolfinx.has_adios2; assert dolfinx.has_kahip; assert not dolfinx.has_parmetis; assert dolfinx.has_petsc; assert dolfinx.has_petsc4py; assert dolfinx.has_ptscotch; assert dolfinx.has_slepc; assert dolfinx.has_complex_ufcx_kernels"

	- name: Set default DOLFINx JIT options
	run: \|
	mkdir -p ~/.config/dolfinx
	echo '{ "cffi_extra_compile_args": ["-g0", "-O0" ] }' > ~/.config/dolfinx/dolfinx_jit_options.json

	- name: Run demos (Python, serial)
	run: \|
	pip install pytest-xdist
	python -m pytest -n auto -m serial --durations=10 python/demo/test.py
	- name: Run demos (Python, MPI (np=3))
	run: python -m pytest -m mpi --num-proc=3 python/demo/test.py

	- name: Run Python unit tests (serial)
	run: python -m pytest -m "petsc4py or adios2" -n=auto --durations=50 python/test/unit/
	- name: Run Python unit tests (MPI, np=3)
	run: mpirun -np 3 python -m pytest -m "petsc4py or adios2" python/test/unit/

	build-and-publish-docs:
	runs-on: ubuntu-latest
	needs: [fenicsx-refs, lint]
	container: "ghcr.io/fenics/test-env:current-openmpi"
	env:
	PETSC_ARCH: linux-gnu-real64-32
	OMPI_ALLOW_RUN_AS_ROOT: 1
	OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
	PRTE_MCA_rmaps_default_mapping_policy: :oversubscribe

	name: Build and publish docs
	steps:
	- uses: actions/checkout@v4

	- name: Install FEniCS Python components (default branches/tags)
	if: github.event_name != 'workflow_dispatch'
	run: \|
	pip install git+https://github.com/FEniCS/ufl.git@${{ needs.fenicsx-refs.outputs.ufl_ref }}
	pip install git+https://github.com/FEniCS/basix.git@${{ needs.fenicsx-refs.outputs.basix_ref }}
	pip install git+https://github.com/FEniCS/ffcx.git@${{ needs.fenicsx-refs.outputs.ffcx_ref }}
	- name: Install FEniCS Python components
	if: github.event_name == 'workflow_dispatch'
	run: \|
	pip install git+https://github.com/FEniCS/ufl.git@${{ github.event.inputs.ufl_ref }}
	pip install git+https://github.com/FEniCS/basix.git@${{ github.event.inputs.basix_ref }}
	pip install git+https://github.com/FEniCS/ffcx.git@${{ github.event.inputs.ffcx_ref }}

	- name: Configure C++
	run: \|
	cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build -S cpp/
	cmake --build build
	cmake --install build

	- name: Build Python interface
	run: \|
	pip install -r python/build-requirements.txt
	pip install --check-build-dependencies --no-build-isolation --config-settings=cmake.build-type="Debug" 'python/[docs]'

	- name: Build C++ interface documentation
	run: \|
	export DOLFINX_VERSION=`cmake -L build \| grep DOXYGEN_DOLFINX_VERSION \| cut -f2 -d "="`
	echo $DOLFINX_VERSION
	cd cpp/doc
	doxygen Doxyfile
	make html
	- name: Upload C++ Doxygen documentation artifact
	uses: actions/upload-artifact@v4
	with:
	name: docs-cpp-doxygen
	path: cpp/doc/html
	retention-days: 2
	- name: Upload C++ Sphinx documentation artifact
	uses: actions/upload-artifact@v4
	with:
	name: docs-cpp-sphinx
	path: cpp/doc/build/html
	retention-days: 2

	- name: Build Python interface documentation
	run: \|
	cd python/doc
	python -m sphinx -W -b html source/ build/html/
	- name: Upload Python documentation artifact
	uses: actions/upload-artifact@v4
	with:
	name: docs-python
	path: python/doc/build/html
	retention-days: 2

	- name: Checkout FEniCS/docs
	if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' \|\| startsWith(github.ref, 'refs/tags/v') ) }}
	uses: actions/checkout@v4
	with:
	repository: "FEniCS/docs"
	path: "docs"
	ssh-key: "${{ secrets.SSH_GITHUB_DOCS_PRIVATE_KEY }}"
	- name: Set version name
	if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' \|\| startsWith(github.ref, 'refs/tags/v') ) }}
	run: \|
	echo "VERSION_NAME=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV
	- name: Copy documentation into repository
	if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' \|\| startsWith(github.ref, 'refs/tags/v') ) }}
	run: \|
	cd docs
	git rm -r --ignore-unmatch dolfinx/${{ env.VERSION_NAME }}/cpp
	git rm -r --ignore-unmatch dolfinx/${{ env.VERSION_NAME }}/python
	mkdir -p dolfinx/${{ env.VERSION_NAME }}/cpp
	mkdir -p dolfinx/${{ env.VERSION_NAME }}/cpp/doxygen
	mkdir -p dolfinx/${{ env.VERSION_NAME }}/python
	cp -r ../cpp/doc/build/html/* dolfinx/${{ env.VERSION_NAME }}/cpp/
	cp -r ../cpp/doc/html/* dolfinx/${{ env.VERSION_NAME }}/cpp/doxygen
	cp -r ../python/doc/build/html/* dolfinx/${{ env.VERSION_NAME }}/python
	- name: Commit and push documentation to FEniCS/docs
	if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' \|\| startsWith(github.ref, 'refs/tags/v') ) }}
	run: \|
	cd docs
	git config --global user.email "fenics@github.com"
	git config --global user.name "FEniCS GitHub Actions"
	git add --all
	git commit --allow-empty -m "C++/Python FEniCS/dolfinx@${{ github.sha }}"
	git push

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Laplacian of nullspace of trace in Q for internal dof functionals TNT quadrilateral #32875

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Laplacian of nullspace of trace in Q for internal dof functionals TNT quadrilateral #32875

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