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Temp fix to autodoc generation timeout problem #265

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Feb 10, 2023
Merged

Temp fix to autodoc generation timeout problem #265

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17 changes: 2 additions & 15 deletions examples/03_data_features/000_matchings.py
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Original file line number Diff line number Diff line change
Expand Up @@ -119,20 +119,7 @@
# ^^^^^^^^^^^^^^^^
#
# There are also data features which are linked to locations in a specific reference space.
# For example, volumes of interest are tested for overlap with bounding boxes of regions.
# The following dataset covering the hippocampus intersects with the mask of CA1.
# Note how `siibra` deals with the fact that the volume of interest is defined in BigBrain space,
# while the region is only mapped in the MNI spaces - it warps the bounding box
# of the region to the space of the feature for the test.
ca1 = siibra.get_region("julich 2.9", "ca1")
features = siibra.features.get(ca1, siibra.features.VolumeOfInterest)
print(features[0].name)
print(features[0].last_match_description)


# %%
# Another example are gene expressions retrieved from the Allen atlas.
# These are linked by the coordinate of their tissue probes in MNI space.
# If a coordinate is inside the selected brain regions, it is an exact match.
# For example, the gene expressions retrieved from the Allen atlas are linked by the coordinate
# of their tissue probes in MNI space. If a coordinate is inside the selected brain regions, it is an exact match.
features = siibra.features.get(v1, siibra.features.molecular.GeneExpressions, gene="TAC1")
print(features[0].last_match_description)