RNAmodR.AlkAnilineSeq uses classes and workflows from RNAmodR to detect
m7G, m3C and D in RNASeq data specifically treated according to the
AlkAnilineSeq protocol.
The vignette from the RNAmodR.AlkAnilineSeq package provides details on the
specific analysis of AlkAnilineSeq data. Have a look at the vignette from the
RNAmodR package for a general description on the provided workflows.
The current version of the RNAmodR.AlkAnilineSeq package is available from Bioconductor.
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAmodR.AlkAnilineSeq")
library(RNAmodR.AlkAnilineSeq)
- Marchand, Virginie, Lilia Ayadi, Felix G. M. Ernst, Jasmin Hertler, Valérie Bourguignon-Igel, Adeline Galvanin, Annika Kotter, Mark Helm, Denis L. J. Lafontaine, and Yuri Motorin. 2018. “AlkAniline-Seq: Profiling of m7G and m3C Rna Modifications at Single Nucleotide Resolution.” Angewandte Chemie International Edition 57 (51): 16785–90. https://doi.org/10.1002/anie.201810946.