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@FelixKrueger FelixKrueger released this 04 Sep 21:17
· 56 commits to master since this release
0.6.6
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Learn about vigilant mode.

Version 0.6.6

  • Changed the way in which we test for the version of Cutadapt, more here:

  • Allowed specifying of multiple adapters for special cases. Works either via the command line, e.g.: -a " AGCTCCCG -a TTTCATTATAT -a TTTATTCGGATTTAT" or via a FastA file, like so: -a "file:multiple_adapters.fa" More info here:

  • Added new special trimming mode for UMIs for the IMPLICON method (--implicon). In this mode, an 8bp UMI (unique molecular identifier) sequence is transferred from the start of Read 2 to the readID of both reads to allow UMI-aware deduplication (e.g. with deduplicate_bismark --barcode or UmiBam. Following this, Trim Galore will exit.

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