returned fgsea back to BiocManager::install list

FertigLab · Dec 30, 2024 · 62f623a · 62f623a
1 parent e39f2a0
commit 62f623a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Dockerfile b/Dockerfile
@@ -10,7 +10,7 @@ RUN sudo apt-get update -y && \
 
 #packages below didn't install with devtools::install_deps, needed BiocManager;
 #it is already installed in rocker/tidyverse:4
-RUN Rscript -e 'BiocManager::install(c("S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "rhdf5"),ask=FALSE)'
+RUN Rscript -e 'BiocManager::install(c("S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "rhdf5", "fgsea"),ask=FALSE)'
 
 #install all other dependencies
 RUN Rscript -e 'devtools::install_deps(".", dependencies=TRUE, upgrade=always)'