Merge pull request #121 from FertigLab/119-build-container-on-merge-t…

…o-main

119 build container on merge to main

Dockerfile

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+# use --platform=linux/amd64 to avoid 'no match for platform in the manifest' on M1
+FROM rocker/tidyverse:4
+
+COPY . /cogaps
+WORKDIR /cogaps
+
+RUN sudo apt-get update -y && \
+    apt-get upgrade -y && \
+    apt-get install libhdf5-dev build-essential patch -y
+
+#packages below didn't install with devtools::install_deps, needed BiocManager
+RUN Rscript -e 'install.packages("BiocManager");\
+                BiocManager::install(c("S4Vectors", "SingleCellExperiment", "SummarizedExperiment", "rhdf5"))'
+
+#install all other dependencies
+RUN Rscript -e 'devtools::install_deps(".", dependencies=TRUE)'
+
+#need to restart R sometimes https://github.com/r-lib/devtools/issues/2395
+RUN Rscript -e 'devtools::install(".", dependencies=TRUE)'
+