chore: apply breaking changes from patcher

src/main/kotlin/app/revanced/cli/Main.kt

@@ -3,27 +3,30 @@ package app.revanced.cli
 import app.revanced.cli.utils.SignatureParser
 import app.revanced.patcher.Patcher
 import app.revanced.patches.Index.patches
+import org.jf.dexlib2.writer.io.MemoryDataStore
 import java.io.File
+import java.nio.file.Files
 
 fun main(args: Array<String>) {
     val patcher = Patcher(
         File(args[0]), // in.apk
-        File(args[1]), // out path
         SignatureParser.parse(args[2]).toTypedArray() // signatures.json
     )
 
     // add integrations dex container
     patcher.addFiles(File(args[3]))
 
-    // load all patches
     for (patch in patches) {
         patcher.addPatches(patch())
     }
 
-    patcher.applyPatches().forEach{ (name, result) ->
+    patcher.applyPatches().forEach { (name, result) ->
         println("$name: $result")
     }
 
     // save patched apk
-    patcher.save()
+    val dexFiles: Map<String, MemoryDataStore> = patcher.save()
+    dexFiles.forEach { (t, p) ->
+        Files.write(File(args[1], t).toPath(), p.buffer)
+    }
 }