spatialGE (web application)

This repository contains code for the web application designed as user-friendly, point-and-click interface to the spatialGE R package. The we application also implements other spatial transcriptomics analysis methods not included in the R package.

about spatialGE

Laravel 10, VueJS 3, Bootstrap 5, Docker...

• NodeJS v18.14.0
• Laravel 10
• VueJS 3
• Bootstrap 5
• Docker (r-base with spatialGE and redis)

Development environment

• composer update
• npm install
• Rename .env.example to .env in the root directory of the project
• Create the DB in MySQL according to the name in .env
• php artisan migrate --seed (change migrate for migrate:fresh to delete all database tables and create them again)
• php artisan storage:link
• Follow the instructions in the readme file inside the _docker folder
• npm run dev (this will run vite to compile any change in real-time)

Server deployment

• Follow the instructions for the development environment, except for the last step, change it for:
• npm run build