This repository contains two Python scripts for checking the format of prediction files for CAFA2 and CAFA3
For more information on CAFA see: http://biofunctionprediction.org Specifically, for the CAFA rules see: http://biofunctionprediction.org/node/8
Running
New for any prediction file:
./cafa_format_checker.py filename
This checks any type of prediction file.
For GO based predictions:
./cafa_go_format_checker.py filename
For Human Phenotype Ontology based predictions (HPO)
./cafa_hpo_format_checker.py filename
Where "filename" is the path to the prediction file
Authored by Iddo Friedberg. Distributed under GPLv3 license (attached)
Contact: idoerg@gmail.com
Important: If you are participating in CAFA, you should subscribe to the afp-cafa mailing list: https://mailman.iastate.edu/mailman/listinfo/afpcafa