Revert "Update yarn sdks"

This reverts commit 04fed09.

.github/workflows/push.yml

@@ -112,7 +112,7 @@ jobs:
           echo "INSTANCE_ADDRESS=$INSTANCE_ADDRESS" >> "$GITHUB_OUTPUT"
       - name: Set up SSH
         run: |
-          mkdir --parents ~/.ssh
+          mkdir ~/.ssh
           echo "${{ secrets.SSH_PRIVATE_KEY  }}" >  ~/.ssh/staging
           chmod 600 ~/.ssh/staging
           cat >>~/.ssh/config <<END

.yarn/sdks/eslint/package.json

@@ -1,14 +1,6 @@
 {
   "name": "eslint",
-  "version": "8.51.0-sdk",
+  "version": "8.45.0-sdk",
   "main": "./lib/api.js",
-  "type": "commonjs",
-  "bin": {
-    "eslint": "./bin/eslint.js"
-  },
-  "exports": {
-    "./package.json": "./package.json",
-    ".": "./lib/api.js",
-    "./use-at-your-own-risk": "./lib/unsupported-api.js"
-  }
+  "type": "commonjs"
 }

.yarn/sdks/prettier/package.json

@@ -1,7 +1,6 @@
 {
   "name": "prettier",
-  "version": "3.0.3-sdk",
-  "main": "./index.cjs",
-  "type": "commonjs",
-  "bin": "./bin/prettier.cjs"
+  "version": "3.0.0-sdk",
+  "main": "./index.js",
+  "type": "commonjs"
 }

.yarn/sdks/typescript/lib/typescript.js

@@ -11,10 +11,10 @@ const absRequire = createRequire(absPnpApiPath);
 
 if (existsSync(absPnpApiPath)) {
   if (!process.versions.pnp) {
-    // Setup the environment to be able to require typescript
+    // Setup the environment to be able to require typescript/lib/typescript.js
     require(absPnpApiPath).setup();
   }
 }
 
-// Defer to the real typescript your application uses
-module.exports = absRequire(`typescript`);
+// Defer to the real typescript/lib/typescript.js your application uses
+module.exports = absRequire(`typescript/lib/typescript.js`);

.yarn/sdks/typescript/package.json

@@ -1,10 +1,6 @@
 {
   "name": "typescript",
-  "version": "5.2.2-sdk",
+  "version": "5.1.6-sdk",
   "main": "./lib/typescript.js",
-  "type": "commonjs",
-  "bin": {
-    "tsc": "./bin/tsc",
-    "tsserver": "./bin/tsserver"
-  }
+  "type": "commonjs"
 }

packages/apollo-collaboration-server/package.json

@@ -30,7 +30,7 @@
     "@gmod/indexedfasta": "^2.0.4",
     "@jbrowse/core": "^2.7.0",
     "@mui/base": "^5.0.0-alpha.118",
-    "@mui/material": "^5.11.14",
+    "@mui/material": "^5.11.10",
     "@nestjs/common": "^10.1.0",
     "@nestjs/config": "^3.0.0",
     "@nestjs/core": "^10.1.0",

packages/apollo-collaboration-server/src/export/export.service.ts

@@ -22,7 +22,7 @@ import {
   RefSeqChunkDocument,
   RefSeqDocument,
 } from 'apollo-schemas'
-import { makeGFF3Feature, splitStringIntoChunks } from 'apollo-shared'
+import { makeGFF3Feature } from 'apollo-shared'
 import { Model } from 'mongoose'
 import StreamConcat from 'stream-concat'
 
@@ -94,6 +94,15 @@ class FastaTransform extends Transform {
   }
 }
 
+function splitStringIntoChunks(input: string, chunkSize: number): string[] {
+  const chunks: string[] = []
+  for (let i = 0; i < input.length; i += chunkSize) {
+    const chunk = input.slice(i, i + chunkSize)
+    chunks.push(chunk)
+  }
+  return chunks
+}
+
 @Injectable()
 export class ExportService {
   constructor(

packages/apollo-common/package.json

@@ -18,8 +18,8 @@
     "tslib": "^2.3.1"
   },
   "peerDependencies": {
-    "@mui/material": "^5.11.14",
-    "@mui/x-data-grid": "^7.0.0",
+    "@mui/material": "^5.11.10",
+    "@mui/x-data-grid": "^6.0.1",
     "mobx": "^6.6.1",
     "mobx-react": "^7.2.1",
     "mobx-state-tree": "^5.1.7",

packages/apollo-shared/package.json

@@ -33,8 +33,8 @@
     "typescript": "^5.1.6"
   },
   "peerDependencies": {
-    "@mui/material": "^5.11.14",
-    "@mui/x-data-grid": "^7.0.0",
+    "@mui/material": "^5.11.10",
+    "@mui/x-data-grid": "^6.0.1",
     "mobx": "^6.6.1",
     "mobx-react": "^7.2.1",
     "mobx-state-tree": "^5.1.7",

packages/apollo-shared/src/Changes/index.ts

@@ -11,7 +11,6 @@ import { DiscontinuousLocationStartChange } from './DiscontinuousLocationStartCh
 import { FeatureAttributeChange } from './FeatureAttributeChange'
 import { LocationEndChange } from './LocationEndChange'
 import { LocationStartChange } from './LocationStartChange'
-import { StrandChange } from './StrandChange'
 import { TypeChange } from './TypeChange'
 import { UserChange } from './UserChange'
 
@@ -29,7 +28,6 @@ export const changes = {
   FeatureAttributeChange,
   LocationEndChange,
   LocationStartChange,
-  StrandChange,
   TypeChange,
   UserChange,
 }
@@ -47,6 +45,5 @@ export * from './DiscontinuousLocationStartChange'
 export * from './FeatureAttributeChange'
 export * from './LocationEndChange'
 export * from './LocationStartChange'
-export * from './StrandChange'
 export * from './TypeChange'
 export * from './UserChange'

packages/apollo-shared/src/util.ts

@@ -94,15 +94,3 @@ export function makeGFF3Feature(
       : [],
   }))
 }
-
-export function splitStringIntoChunks(
-  input: string,
-  chunkSize: number,
-): string[] {
-  const chunks: string[] = []
-  for (let i = 0; i < input.length; i += chunkSize) {
-    const chunk = input.slice(i, i + chunkSize)
-    chunks.push(chunk)
-  }
-  return chunks
-}

packages/jbrowse-plugin-apollo/package.json

@@ -76,7 +76,7 @@
   },
   "peerDependencies": {
     "@jbrowse/core": "^2.7.0",
-    "@mui/material": "^5.11.14",
+    "@mui/material": "^5.11.10",
     "mobx": "^6.6.1",
     "mobx-react": "^7.2.1",
     "mobx-state-tree": "^5.1.7",
@@ -91,8 +91,8 @@
     "@jbrowse/core": "^2.7.0",
     "@jbrowse/development-tools": "^2.1.1",
     "@jest/globals": "^29.0.3",
-    "@mui/material": "^5.11.14",
-    "@mui/x-data-grid": "^7.0.0",
+    "@mui/material": "^5.11.10",
+    "@mui/x-data-grid": "^6.0.1",
     "@types/autosuggest-highlight": "^3",
     "@types/file-saver": "^2",
     "@types/node": "^18.14.2",