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Make feature type ontology configurable #472

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merged 1 commit into from
Nov 13, 2024

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garrettjstevens
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With this change, if you want to use a custom ontology as the feature type ontology (instead of the default Sequence Ontology), you can configure it like this in the JBrowse config:

{
  "configuration": {
    "ApolloPlugin": {
      "featureTypeOntologyName": "My Custom Ontology",
      "ontologies": [
        {
          "name": "My Custom Ontology",
          "version": "1",
          "source": {
            "uri": "data/my_custom_ontology.json",
            "locationType": "UriLocation"
          }
        }
      ]
    }
  }
}

Fixes #458

@garrettjstevens garrettjstevens self-assigned this Oct 25, 2024
@garrettjstevens garrettjstevens merged commit 1433542 into main Nov 13, 2024
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@garrettjstevens garrettjstevens deleted the configurable-ontology-issue458-gs branch November 13, 2024 23:30
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Make ontology for feature types configurable
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