Fix opening track selector causing crash in v2.13.0 #11140
Workflow file for this run
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name: Push | |
on: push | |
jobs: | |
test: | |
name: Test and typecheck on node 20.x and ubuntu-latest | |
runs-on: ubuntu-latest | |
steps: | |
- run: sudo apt-get -y install tabix | |
- uses: actions/checkout@v4 | |
- name: Use Node.js 20.x | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '20' | |
- name: Install deps (with cache) | |
uses: bahmutov/npm-install@v1 | |
- name: Test codebase | |
run: yarn test-ci | |
- name: Upload coverage | |
uses: codecov/codecov-action@v4 | |
- name: Typecheck codebase | |
run: yarn typecheck | |
buildwebsite: | |
name: Build website on node 20 and ubuntu-latest | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Use Node.js 20 | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '20' | |
- name: Install website deps (with cache) | |
uses: bahmutov/npm-install@v1 | |
with: | |
working-directory: website | |
- name: Build website | |
run: | | |
cd website/ | |
yarn build | |
mkdir testing | |
mv build testing/jb2 | |
- name: Check website links | |
uses: untitaker/hyperlink@0.1.27 | |
with: | |
args: website/testing/ --check-anchors | |
buildwholerepo: | |
name: Build whole repo on node 20 and ubuntu-latest | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Use Node.js 20 | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '20' | |
- name: Install deps (with cache) | |
uses: bahmutov/npm-install@v1 | |
- name: Build codebase | |
run: yarn build | |
- name: Test build | |
run: BUILT_TESTS=1 yarn built-test-ci | |
- name: Test embedded lgv | |
run: | | |
yarn | |
yarn build | |
yarn test:e2e | |
working-directory: component_tests/lgv | |
- name: Test embedded cgv | |
run: | | |
yarn | |
yarn build | |
yarn test:e2e | |
working-directory: component_tests/cgv | |
- name: Test embedded react-app | |
run: | | |
yarn | |
yarn build | |
yarn test:e2e | |
working-directory: component_tests/react-app | |
buildjbrowseweb: | |
name: Build only jbrowse-web and upload to s3 on node 20 and ubuntu-latest | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Use Node.js 20 | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '20' | |
- name: Install deps (with cache) | |
uses: bahmutov/npm-install@v1 | |
- name: Build project | |
run: | | |
echo $RELEASE_VERSION | |
cd products/jbrowse-web/ | |
NODE_OPTIONS='--max-old-space-size=6500' yarn build | |
cd ../../ | |
- name: Configure AWS credentials | |
uses: aws-actions/configure-aws-credentials@v4 | |
with: | |
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
aws-region: us-east-1 | |
- name: Copy branch build to S3 | |
run: | | |
cd products/jbrowse-web/build && zip -r "jbrowse-web-$(echo ${{github.ref}} | cut -d '/' -f3-).zip" . && cd - | |
cp products/jbrowse-web/build/test_data/config.json products/jbrowse-web/build/config.json | |
aws s3 sync --delete products/jbrowse-web/build s3://jbrowse.org/code/jb2/$(echo ${{github.ref}} | cut -d "/" -f3-) | |
storybook_lgv: | |
name: Build and deploy static linear genome view Storybook site to AWS S3 | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Use Node.js 20 | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '20' | |
- name: Install deps (with cache) | |
uses: bahmutov/npm-install@v1 | |
- name: Build Storybook static site | |
run: | | |
yarn storybook:build | |
working-directory: products/jbrowse-react-linear-genome-view | |
- name: Configure AWS credentials | |
uses: aws-actions/configure-aws-credentials@v4 | |
with: | |
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
aws-region: us-east-1 | |
- name: Deploy Storybook for branch to S3 | |
run: | | |
pwd | |
aws s3 sync --delete storybook-static s3://jbrowse.org/storybook/lgv/$(echo ${{github.ref}} | cut -d "/" -f3-) | |
aws cloudfront create-invalidation --distribution-id E13LGELJOT4GQO --paths "/storybook/lgv/$(echo ${{github.ref}} | cut -d "/" -f3-)/*" | |
working-directory: products/jbrowse-react-linear-genome-view | |
storybook_app: | |
name: Build and deploy static react app Storybook site to AWS S3 | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Use Node.js 20 | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '20' | |
- name: Install deps (with cache) | |
uses: bahmutov/npm-install@v1 | |
- name: Build Storybook static site | |
run: | | |
yarn storybook:build | |
working-directory: products/jbrowse-react-app | |
- name: Configure AWS credentials | |
uses: aws-actions/configure-aws-credentials@v4 | |
with: | |
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
aws-region: us-east-1 | |
- name: Deploy Storybook for branch to S3 | |
run: | | |
pwd | |
aws s3 sync --delete storybook-static s3://jbrowse.org/storybook/app/$(echo ${{github.ref}} | cut -d "/" -f3-) | |
aws cloudfront create-invalidation --distribution-id E13LGELJOT4GQO --paths "/storybook/app/$(echo ${{github.ref}} | cut -d "/" -f3-)/*" | |
working-directory: products/jbrowse-react-app | |
storybook_cgv: | |
name: Build and deploy static circular genome view Storybook site to AWS S3 | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Use Node.js 20 | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '20' | |
- name: Install deps (with cache) | |
uses: bahmutov/npm-install@v1 | |
- name: Build Storybook static site | |
run: | | |
yarn storybook:build | |
working-directory: products/jbrowse-react-circular-genome-view | |
- name: Configure AWS credentials | |
uses: aws-actions/configure-aws-credentials@v4 | |
with: | |
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
aws-region: us-east-1 | |
- name: Deploy Storybook for branch to S3 | |
run: | | |
pwd | |
aws s3 sync --delete storybook-static s3://jbrowse.org/storybook/cgv/$(echo ${{github.ref}} | cut -d "/" -f3-) | |
aws cloudfront create-invalidation --distribution-id E13LGELJOT4GQO --paths "/storybook/cgv/$(echo ${{github.ref}} | cut -d "/" -f3-)/*" | |
working-directory: products/jbrowse-react-circular-genome-view | |
lint: | |
name: Lint on node 20 and ubuntu-latest | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Use Node.js 20 | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '20' | |
- name: Install deps and build (with cache) | |
uses: bahmutov/npm-install@v1 | |
- name: Lint codebase | |
run: yarn lint | |
formatchecks: | |
name: Format/spellcheck/docs on node 20 and ubuntu-latest | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Use Node.js 20 | |
uses: actions/setup-node@v4 | |
with: | |
node-version: '20' | |
- name: Install deps and build (with cache) | |
uses: bahmutov/npm-install@v1 | |
- name: Check codebase format | |
run: yarn prettier --check . | |
- name: Check autogen docs | |
run: yarn statedocs && yarn configdocs | |
- name: Spellcheck | |
uses: crate-ci/typos@master |