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Prepare for v2.8.0 release
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52 changes: 52 additions & 0 deletions CHANGELOG.md
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yarn run v1.22.19 $ lerna-changelog --silent --next-version 2.8.0

## 2.8.0 (2023-11-09)

#### :rocket: Enhancement

- Other
- [#4045](https://github.com/GMOD/jbrowse-components/pull/4045) Create
multi-region arc display type for variant tracks
([@cmdcolin](https://github.com/cmdcolin))
- [#4050](https://github.com/GMOD/jbrowse-components/pull/4050) Allow
specifying alternative config.json path via global variable
([@cmdcolin](https://github.com/cmdcolin))
- [#4046](https://github.com/GMOD/jbrowse-components/pull/4046) Show last
autosave on jbrowse-web start screen
([@cmdcolin](https://github.com/cmdcolin))
- [#4044](https://github.com/GMOD/jbrowse-components/pull/4044) Speed up
"multi-region" navigation in search box
([@cmdcolin](https://github.com/cmdcolin))
- [#4032](https://github.com/GMOD/jbrowse-components/pull/4032) Add
`jbrowse sort-gff` subcommand ([@cmdcolin](https://github.com/cmdcolin))
- `product-core`
- [#4040](https://github.com/GMOD/jbrowse-components/pull/4040) Strip baseUri
in 'About track' copy config ([@cmdcolin](https://github.com/cmdcolin))
- `core`
- [#4035](https://github.com/GMOD/jbrowse-components/pull/4035) Prompt to
horizontally flip view when launching linear synteny view on inverted
feature ([@cmdcolin](https://github.com/cmdcolin))
- `app-core`
- [#4024](https://github.com/GMOD/jbrowse-components/pull/4024) Add
right-handed arrow to view title to emphasize the focused view
([@carolinebridge-oicr](https://github.com/carolinebridge-oicr))

#### :bug: Bug Fix

- [#4052](https://github.com/GMOD/jbrowse-components/pull/4052) Fix browser back
button behavior in jbrowse-web ([@cmdcolin](https://github.com/cmdcolin))
- [#4043](https://github.com/GMOD/jbrowse-components/pull/4043) Fix crash in
"Open session" widget for sessions that have 'track-less views'
([@cmdcolin](https://github.com/cmdcolin))

#### :memo: Documentation

- [#4027](https://github.com/GMOD/jbrowse-components/pull/4027) Add office hours
and community meetings ([@cmdcolin](https://github.com/cmdcolin))

#### Committers: 2

- Caroline Bridge
([@carolinebridge-oicr](https://github.com/carolinebridge-oicr))
- Colin Diesh ([@cmdcolin](https://github.com/cmdcolin)) Done in 2.23s.

yarn run v1.22.19 $ lerna-changelog --silent --next-version 2.7.2

## 2.7.2 (2023-10-27)
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93 changes: 93 additions & 0 deletions website/blog/2023-11-09-v2.8.0-release.md
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---
title: v2.8.0 Release
date: 2023-11-09 16:18:56
tags: ['release', 'jbrowse 2']
---

This release improves support for BEDPE and arc rendering of structural
variants.

It also adds a new CLI command called `jbrowse sort-gff` that intends to help
simplify the loading of GFF tabix tracks.

Usage:

```
jbrowse sort-gff yourfile.gff | bgzip > yourfile.sorted.gff.gz
tabix yourfile.sorted.gff.gz
jbrowse add-track yourfile.sorted.gff.gz --load copy --out /var/www/html/jbrowse2
```

The jbrowse CLI tool can load BEDPE files with simply
`jbrowse add-track yourfile.bedpe` (or, optionally gzipped e.g.
yourfile.bedpe.gz)

![](https://user-images.githubusercontent.com/6511937/281789167-aef6ccd2-c7e4-444e-b213-f3876fedabf9.png)

Screenshot showing the same data rendered as both a BEDPE file and VCF file with
different variant types (`<DUP>, <DEL>, <INV>, <TRA>`). Notably, this arc
rendering can render 'cross-region' or 'inter-chromosomal' arcs.

Also, if you haven't seen it, check out our new office hours and community call
schedule! See https://jbrowse.org/jb2/blog/2023/11/03/office-hours/

## Downloads

- [v2.8.0](https://github.com/GMOD/jbrowse-components/releases/tag/v2.8.0)

To install JBrowse 2 for the web, you can download the link above, or you can
use the JBrowse CLI to automatically download the latest version. See the
[JBrowse web quick start](https://jbrowse.org/jb2/docs/quickstart_web) for more
details.

yarn run v1.22.19 $ lerna-changelog --silent --next-version 2.8.0

## 2.8.0 (2023-11-09)

#### :rocket: Enhancement

- Other
- [#4045](https://github.com/GMOD/jbrowse-components/pull/4045) Create
multi-region arc display type for variant tracks
([@cmdcolin](https://github.com/cmdcolin))
- [#4050](https://github.com/GMOD/jbrowse-components/pull/4050) Allow
specifying alternative config.json path via global variable
([@cmdcolin](https://github.com/cmdcolin))
- [#4046](https://github.com/GMOD/jbrowse-components/pull/4046) Show last
autosave on jbrowse-web start screen
([@cmdcolin](https://github.com/cmdcolin))
- [#4044](https://github.com/GMOD/jbrowse-components/pull/4044) Speed up
"multi-region" navigation in search box
([@cmdcolin](https://github.com/cmdcolin))
- [#4032](https://github.com/GMOD/jbrowse-components/pull/4032) Add
`jbrowse sort-gff` subcommand ([@cmdcolin](https://github.com/cmdcolin))
- `product-core`
- [#4040](https://github.com/GMOD/jbrowse-components/pull/4040) Strip baseUri
in 'About track' copy config ([@cmdcolin](https://github.com/cmdcolin))
- `core`
- [#4035](https://github.com/GMOD/jbrowse-components/pull/4035) Prompt to
horizontally flip view when launching linear synteny view on inverted
feature ([@cmdcolin](https://github.com/cmdcolin))
- `app-core`
- [#4024](https://github.com/GMOD/jbrowse-components/pull/4024) Add
right-handed arrow to view title to emphasize the focused view
([@carolinebridge-oicr](https://github.com/carolinebridge-oicr))

#### :bug: Bug Fix

- [#4052](https://github.com/GMOD/jbrowse-components/pull/4052) Fix browser back
button behavior in jbrowse-web ([@cmdcolin](https://github.com/cmdcolin))
- [#4043](https://github.com/GMOD/jbrowse-components/pull/4043) Fix crash in
"Open session" widget for sessions that have 'track-less views'
([@cmdcolin](https://github.com/cmdcolin))

#### :memo: Documentation

- [#4027](https://github.com/GMOD/jbrowse-components/pull/4027) Add office hours
and community meetings ([@cmdcolin](https://github.com/cmdcolin))

#### Committers: 2

- Caroline Bridge
([@carolinebridge-oicr](https://github.com/carolinebridge-oicr))
- Colin Diesh ([@cmdcolin](https://github.com/cmdcolin)) Done in 2.23s.
2 changes: 1 addition & 1 deletion website/docusaurus.config.json
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"organizationName": "GMOD",
"projectName": "jbrowse-components",
"customFields": {
"currentVersion": "v2.7.2"
"currentVersion": "v2.8.0"
},
"themeConfig": {
"colorMode": {
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