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This release adds a couple small bugfixes. It also adds a new CLI command called | ||
`jbrowse sort-gff` that intends to help simplify the loading of GFF tabix | ||
tracks. The usage is as follows | ||
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``` | ||
jbrowse sort-gff yourfile.gff | bgzip > yourfile.sorted.gff.gz | ||
tabix yourfile.sorted.gff.gz | ||
jbrowse add-track yourfile.sorted.gff.gz --load copy --out /var/www/html/jbrowse2 | ||
``` | ||
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This release also improves support for plotting arcs from breakend and SV style | ||
VCF and BEDPE files. The jbrowse CLI tool can load BEDPE files | ||
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![](https://user-images.githubusercontent.com/6511937/281789167-aef6ccd2-c7e4-444e-b213-f3876fedabf9.png) | ||
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Screenshot showing the same data rendered as both a BEDPE file and VCF file with | ||
different variant types (DUP, DEL, INV, TRA) |