Fix lint

GMOD · May 19, 2022 · c6f9b84 · c6f9b84
1 parent abf9bff
commit c6f9b84
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Showing 3 changed files with 3 additions and 5 deletions.
diff --git a/plugins/alignments/src/BamAdapter/MismatchParser.test.ts b/plugins/alignments/src/BamAdapter/MismatchParser.test.ts
@@ -235,13 +235,11 @@ test('clipping', () => {
 
 test('getNextRefPos test 1', () => {
   const cigar = parseCigar('10S10M1I4M1D15M')
-  console.log({ cigar })
   const iter = getNextRefPos(cigar, [5, 10, 15, 20, 25, 30, 35])
   expect([...iter]).toEqual([0, 5, 15, 20, 25])
 })
 test('getNextRefPos test 2', () => {
   const cigar = parseCigar('10S15M')
-  console.log({ cigar })
   const iter = getNextRefPos(cigar, [5, 10, 15])
   expect([...iter]).toEqual([0, 5])
 })

diff --git a/plugins/alignments/src/BamAdapter/MismatchParser.ts b/plugins/alignments/src/BamAdapter/MismatchParser.ts
@@ -296,7 +296,7 @@ export function getModificationPositions(
     for (let j = 0; j < types.length; j++) {
       const type = types[j]
       let i = 0
-      let positions = []
+      const positions = []
       for (let k = 0; k < skips.length; k++) {
         let delta = +skips[k]
         do {
@@ -305,7 +305,7 @@ export function getModificationPositions(
           }
           i++
         } while (delta >= 0 && i < seq.length)
-        if (i >= seq.length) console.log('ran out of sequence')
+
         const temp = i - 1
         positions.push(fstrand === -1 ? seq.length - 1 - temp : temp)
       }

diff --git a/plugins/alignments/src/PileupRenderer/PileupRenderer.tsx b/plugins/alignments/src/PileupRenderer/PileupRenderer.tsx
@@ -400,7 +400,7 @@ export default class PileupRenderer extends BoxRendererType {
     props: RenderArgsDeserializedWithFeaturesAndLayout,
   ) {
     const { feature, topPx, heightPx } = layoutFeature
-    const { regionSequence, modificationTagMap = {} } = props
+    const { modificationTagMap = {} } = props
 
     const mm = (getTagAlt(feature, 'MM', 'Mm') as string) || ''