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Gaius-Augustus

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  1. BRAKER BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 364 81

  2. Augustus Augustus Public

    Genome annotation with AUGUSTUS

    C++ 289 110

  3. GALBA GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 131 4

  4. TSEBRA TSEBRA Public

    Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 47 5

  5. MakeHub MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 34 4

  6. Tiberius Tiberius Public

    deep learning gene finder

    Python 33 3

Repositories

Showing 10 of 19 repositories
  • Tiberius Public

    deep learning gene finder

    Gaius-Augustus/Tiberius’s past year of commit activity
    Python 33 MIT 3 6 0 Updated Nov 19, 2024
  • Augustus Public

    Genome annotation with AUGUSTUS

    Gaius-Augustus/Augustus’s past year of commit activity
    C++ 289 110 156 5 Updated Nov 19, 2024
  • learnMSA Public

    Learning and Aligning Large Protein Families (MSA-HMM)

    Gaius-Augustus/learnMSA’s past year of commit activity
    Jupyter Notebook 19 MIT 2 4 0 Updated Nov 18, 2024
  • GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

    Gaius-Augustus/GALBA’s past year of commit activity
    Perl 131 4 9 1 Updated Nov 15, 2024
  • BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Gaius-Augustus/BRAKER’s past year of commit activity
    Perl 364 81 141 (3 issues need help) 1 Updated Nov 14, 2024
  • TSEBRA Public Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Gaius-Augustus/TSEBRA’s past year of commit activity
    Python 47 6 11 0 Updated Nov 13, 2024
  • clamsa Public Forked from liemonade/clamsa

    ClaMSA (Classify Multiple Sequence Alignments).

    Gaius-Augustus/clamsa’s past year of commit activity
    Python 11 2 4 (1 issue needs help) 0 Updated Nov 5, 2024
  • MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Gaius-Augustus/MakeHub’s past year of commit activity
    Python 34 GPL-3.0 4 0 0 Updated Oct 2, 2024
  • Diatom_annotation_scripts Public

    Helper scripts to prepare a functionally decorated BRAKER output file for upload to NCBI Genomes

    Gaius-Augustus/Diatom_annotation_scripts’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 16, 2024
  • tf_tcmc Public Forked from liemonade/tf_tcmc

    Tensorflow Implementation for calculating graphical probabilistical models with edge transitions modelled by Time-reversible Continuous-time Markov Chains (TCMC).

    Gaius-Augustus/tf_tcmc’s past year of commit activity
    Python 2 1 1 0 Updated Aug 16, 2024
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