try adding a version #436
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| name: LAPIS | |
| on: [ push ] | |
| env: | |
| DOCKER_IMAGE_NAME: ghcr.io/genspectrum/lapis | |
| jobs: | |
| Tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up JDK | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '21' | |
| distribution: 'adopt' | |
| - name: Setup Gradle | |
| uses: gradle/actions/setup-gradle@v4 | |
| - name: Execute Tests | |
| working-directory: lapis | |
| run: ./gradlew test | |
| - name: Check Format And Lint | |
| working-directory: lapis | |
| run: ./gradlew ktlintCheck | |
| dockerImage: | |
| name: Build Docker Image | |
| runs-on: ubuntu-latest | |
| permissions: | |
| packages: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Docker metadata | |
| id: dockerMetadata | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_IMAGE_NAME }} | |
| tags: | | |
| type=ref,event=branch,enable=${{ github.ref != format('refs/heads/{0}', 'main') }} | |
| type=raw,value=latest,enable=${{ github.ref == format('refs/heads/{0}', 'main') }} | |
| - name: Build application image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./lapis | |
| tags: ${{ steps.dockerMetadata.outputs.tags }} | |
| cache-from: type=gha,scope=lapis-${{ github.ref }} | |
| cache-to: type=gha,mode=max,scope=lapis-${{ github.ref }} | |
| platforms: ${{ github.ref == 'refs/heads/main' && 'linux/amd64,linux/arm64' || 'linux/amd64' }} | |
| push: false | |
| - name: Build and push versioned image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./lapis | |
| file: ./lapis/Dockerfile_versionSupplier | |
| tags: ${{ steps.dockerMetadata.outputs.tags }} | |
| platforms: ${{ github.ref == 'refs/heads/main' && 'linux/amd64,linux/arm64' || 'linux/amd64' }} | |
| push: true | |
| build-args: | | |
| BASE_IMAGE=${{ steps.dockerMetadata.outputs.tags }} | |
| VERSION=${{ github.sha }} | |
| endToEndTests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up JDK | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '21' | |
| distribution: 'adopt' | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: lts/* | |
| - name: Setup Gradle | |
| uses: gradle/actions/setup-gradle@v4 | |
| - name: Build OpenAPI Spec | |
| working-directory: lapis | |
| run: ./gradlew generateOpenApiDocs | |
| - name: Build OpenAPI Spec Protected | |
| working-directory: lapis | |
| run: ./gradlew generateOpenApiDocs -PopennessLevel=protected | |
| - name: Build OpenAPI Spec Multi segmented | |
| working-directory: lapis | |
| run: ./gradlew generateOpenApiDocs -Psegmented=true | |
| - name: Cache .npm | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.npm | |
| key: ${{ runner.os }}-node-${{ hashFiles('lapis-e2e/**/package-lock.json') }} | |
| - name: Prepare Tests | |
| run: npm ci | |
| working-directory: lapis-e2e | |
| - name: Generate Lapis Client | |
| run: npm run generateLapisClient | |
| working-directory: lapis-e2e | |
| - name: Generate Lapis Client Protected | |
| run: npm run generateLapisClientProtected | |
| working-directory: lapis-e2e | |
| - name: Generate Lapis Client Multi Segmented | |
| run: npm run generateLapisClientMultiSegmented | |
| working-directory: lapis-e2e | |
| - name: Check Format | |
| run: npm run check-format | |
| working-directory: lapis-e2e | |
| - name: Docker metadata | |
| id: dockerMetadata | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_IMAGE_NAME }} | |
| tags: | | |
| type=ref,event=branch,enable=${{ github.ref != 'refs/heads/main' }} | |
| type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' }} | |
| - name: Get LAPIS Branch Tag | |
| id: lapisBranchTag | |
| env: | |
| TAG: ${{ steps.dockerMetadata.outputs.tags }} | |
| run: echo "lapisTag=${TAG##*:}" >> $GITHUB_OUTPUT | |
| - name: Wait for Docker Image | |
| uses: lewagon/wait-on-check-action@v1.3.4 | |
| with: | |
| ref: ${{ github.ref }} | |
| check-name: Build Docker Image | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Start SILO and LAPIS and Run Tests | |
| run: | | |
| docker compose -f lapis/docker-compose.yml pull | |
| docker compose -f lapis/docker-compose.yml up -d --wait | |
| cd lapis-e2e && npm run test | |
| env: | |
| SILO_TAG: latest | |
| LAPIS_TAG: ${{ steps.lapisBranchTag.outputs.lapisTag }} | |
| - name: Store Logs | |
| if: ${{ always() }} | |
| run: | | |
| cd lapis | |
| mkdir p e2e-logs | |
| docker compose logs silo > e2e-logs/silo.log | |
| docker compose logs siloPreprocessing > e2e-logs/siloPreprocessing.log | |
| docker compose logs siloMultisegmented > e2e-logs/siloMultisegmented.log | |
| docker compose logs siloPreprocessingMultisegmented > e2e-logs/siloPreprocessingMultisegmented.log | |
| docker compose logs lapisOpen > e2e-logs/lapisOpen.log | |
| docker compose logs lapisProtected > e2e-logs/lapisProtected.log | |
| docker compose logs lapisMultiSegmented > e2e-logs/lapisMultiSegmented.log | |
| env: | |
| SILO_TAG: latest | |
| LAPIS_TAG: ${{ steps.lapisBranchTag.outputs.lapisTag }} | |
| - name: Upload logs | |
| if: ${{ always() }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: logs | |
| path: lapis/e2e-logs |