Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Error in writing vcd #21

Open
zyha opened this issue Jan 18, 2022 · 0 comments
Open

Error in writing vcd #21

zyha opened this issue Jan 18, 2022 · 0 comments
Assignees
@rebeccaito
Labels
bug Something isn't working
Milestone
2022.0

Comments

@zyha
Copy link

zyha commented Jan 18, 2022 •
edited
Loading

Hi,

I'm trying to run my samples through SCRAMble, 44/293 samples failed due to this error, the rest ran smoothly.

The output file is .vcf that is 3321 in size that contain the title row.

10436 Writing VCF file to sample.vcf...
10437 Error in .Call2("C_solve_user_SEW", refwidths, start, end, width, translate.negative.coord, :
10438 solving row 1: 'allow.nonnarrowing' is FALSE and the supplied start (0) is < 1
10439 Calls: write.scramble.vcf ... make_IRanges_from_windows_args -> solveUserSEW -> .Call2
10440 Execution halted
@rebeccaito rebeccaito self-assigned this Feb 11, 2022
@rebeccaito rebeccaito added the bug Something isn't working label Feb 11, 2022
@rebeccaito rebeccaito added this to the 2022.0 milestone Feb 11, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@rebeccaito rebeccaito

Labels
bug Something isn't working
Projects
None yet
Milestone
2022.0
Development

No branches or pull requests
2 participants
@rebeccaito @zyha