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GenericMappingTools · Dec 6, 2024 · f3b5e46 · f3b5e46
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diff --git a/_images/a18fcb026fb0d0c83360f2b8382a360e552dd50db6aa2db5311259bf5223d3a2.png b/_images/a18fcb026fb0d0c83360f2b8382a360e552dd50db6aa2db5311259bf5223d3a2.png
diff --git a/_images/b3e45577786a5769fb54bb550f7032f3a73adc8289e08523d052827560bf3b0e.png b/_images/b3e45577786a5769fb54bb550f7032f3a73adc8289e08523d052827560bf3b0e.png
diff --git a/_sources/intro.md b/_sources/intro.md
@@ -15,7 +15,7 @@ tutorials for making maps 🗺️ and animations 🎦
 :gutter: 1
 
 :::{grid-item-card} Tutorial 1 - First figure 🚀 and Subplots / layout
-:img-top: \_images/fd70248f75b8b37ee54b3135f77705f98c6d8489eb18b6910184b447d0f0638d.png
+:img-top: \_images/595c695c25a21e4711d8c268a368ef6fee13a6d9d7918e1ebdb92d8b0bbd4475.png
 :link: ./tut01_firstfigure.html
 by [Jing-Hui Tong](https://orcid.org/0009-0002-7195-3071)
 +++

diff --git a/intro.html b/intro.html
@@ -438,7 +438,7 @@ <h2>📚 Overview of tutorials<a class="headerlink" href="#overview-of-tutorials
 <div class="sd-row sd-row-cols-1 sd-row-cols-xs-1 sd-row-cols-sm-1 sd-row-cols-md-1 sd-row-cols-lg-1 sd-g-1 sd-g-xs-1 sd-g-sm-1 sd-g-md-1 sd-g-lg-1 docutils">
 <div class="sd-col sd-d-flex-row docutils">
 <div class="sd-card sd-sphinx-override sd-w-100 sd-shadow-sm sd-card-hover docutils">
-<img alt="" class="sd-card-img-top" src="_images/fd70248f75b8b37ee54b3135f77705f98c6d8489eb18b6910184b447d0f0638d.png" />
+<img alt="" class="sd-card-img-top" src="_images/595c695c25a21e4711d8c268a368ef6fee13a6d9d7918e1ebdb92d8b0bbd4475.png" />
 <div class="sd-card-body docutils">
 <div class="sd-card-title sd-font-weight-bold docutils">
 Tutorial 1 - First figure 🚀 and Subplots / layout</div>

diff --git a/reports/tut03_spe_xarray.err.log b/reports/tut03_spe_xarray.err.log
@@ -0,0 +1,61 @@
+Traceback (most recent call last):
+  File "/home/runner/micromamba/envs/agu24workshop/lib/python3.12/site-packages/jupyter_cache/executors/utils.py", line 58, in single_nb_execution
+    executenb(
+  File "/home/runner/micromamba/envs/agu24workshop/lib/python3.12/site-packages/nbclient/client.py", line 1314, in execute
+    return NotebookClient(nb=nb, resources=resources, km=km, **kwargs).execute()
+           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+  File "/home/runner/micromamba/envs/agu24workshop/lib/python3.12/site-packages/jupyter_core/utils/__init__.py", line 165, in wrapped
+    return loop.run_until_complete(inner)
+           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+  File "/home/runner/micromamba/envs/agu24workshop/lib/python3.12/asyncio/base_events.py", line 687, in run_until_complete
+    return future.result()
+           ^^^^^^^^^^^^^^^
+  File "/home/runner/micromamba/envs/agu24workshop/lib/python3.12/site-packages/nbclient/client.py", line 709, in async_execute
+    await self.async_execute_cell(
+  File "/home/runner/micromamba/envs/agu24workshop/lib/python3.12/site-packages/nbclient/client.py", line 1062, in async_execute_cell
+    await self._check_raise_for_error(cell, cell_index, exec_reply)
+  File "/home/runner/micromamba/envs/agu24workshop/lib/python3.12/site-packages/nbclient/client.py", line 918, in _check_raise_for_error
+    raise CellExecutionError.from_cell_and_msg(cell, exec_reply_content)
+nbclient.exceptions.CellExecutionError: An error occurred while executing the following cell:
+------------------
+# Download the dataset from the IRI Data Library
+url = "https://iridl.ldeo.columbia.edu/SOURCES/.NOAA/.NODC/.WOA09/.Grid-1x1/.Annual/.temperature/.t_an/data.nc"
+netcdf_file = pygmt.which(fname=url, download=True)
+woa_temp = xr.open_dataset(netcdf_file).isel(time=0)
+woa_temp
+------------------
+
+----- stderr -----
+gmtwhich [ERROR]: Libcurl Error: Timeout was reached
+----- stderr -----
+gmtwhich [ERROR]: Unable to obtain remote file https://iridl.ldeo.columbia.edu/SOURCES/.NOAA/.NODC/.WOA09/.Grid-1x1/.Annual/.temperature/.t_an/data.nc
+----- stderr -----
+gmtwhich [ERROR]: File https://iridl.ldeo.columbia.edu/SOURCES/.NOAA/.NODC/.WOA09/.Grid-1x1/.Annual/.temperature/.t_an/data.nc not found!
+------------------
+
+[0;31m---------------------------------------------------------------------------[0m
+[0;31mFileNotFoundError[0m                         Traceback (most recent call last)
+Cell [0;32mIn[6], line 3[0m
+[1;32m      1[0m [38;5;66;03m# Download the dataset from the IRI Data Library[39;00m
+[1;32m      2[0m url [38;5;241m=[39m [38;5;124m"[39m[38;5;124mhttps://iridl.ldeo.columbia.edu/SOURCES/.NOAA/.NODC/.WOA09/.Grid-1x1/.Annual/.temperature/.t_an/data.nc[39m[38;5;124m"[39m
+[0;32m----> 3[0m netcdf_file [38;5;241m=[39m [43mpygmt[49m[38;5;241;43m.[39;49m[43mwhich[49m[43m([49m[43mfname[49m[38;5;241;43m=[39;49m[43murl[49m[43m,[49m[43m [49m[43mdownload[49m[38;5;241;43m=[39;49m[38;5;28;43;01mTrue[39;49;00m[43m)[49m
+[1;32m      4[0m woa_temp [38;5;241m=[39m xr[38;5;241m.[39mopen_dataset(netcdf_file)[38;5;241m.[39misel(time[38;5;241m=[39m[38;5;241m0[39m)
+[1;32m      5[0m woa_temp
+
+File [0;32m~/micromamba/envs/agu24workshop/lib/python3.12/site-packages/pygmt/helpers/decorators.py:609[0m, in [0;36muse_alias.<locals>.alias_decorator.<locals>.new_module[0;34m(*args, **kwargs)[0m
+[1;32m    603[0m     msg [38;5;241m=[39m (
+[1;32m    604[0m         [38;5;124m"[39m[38;5;124mParameters [39m[38;5;124m'[39m[38;5;124mY[39m[38;5;124m'[39m[38;5;124m and [39m[38;5;124m'[39m[38;5;124myshift[39m[38;5;124m'[39m[38;5;124m are no longer supported since v0.12.0. [39m[38;5;124m"[39m
+[1;32m    605[0m         [38;5;124m"[39m[38;5;124mUse Figure.shift_origin(yshift=...) instead.[39m[38;5;124m"[39m
+[1;32m    606[0m     )
+[1;32m    607[0m     [38;5;28;01mraise[39;00m GMTInvalidInput(msg)
+[0;32m--> 609[0m [38;5;28;01mreturn[39;00m [43mmodule_func[49m[43m([49m[38;5;241;43m*[39;49m[43margs[49m[43m,[49m[43m [49m[38;5;241;43m*[39;49m[38;5;241;43m*[39;49m[43mkwargs[49m[43m)[49m
+
+File [0;32m~/micromamba/envs/agu24workshop/lib/python3.12/site-packages/pygmt/src/which.py:71[0m, in [0;36mwhich[0;34m(fname, **kwargs)[0m
+[1;32m     69[0m [38;5;28;01mcase[39;00m [38;5;241m0[39m:
+[1;32m     70[0m     _fname [38;5;241m=[39m [38;5;124m"[39m[38;5;124m'[39m[38;5;124m, [39m[38;5;124m'[39m[38;5;124m"[39m[38;5;241m.[39mjoin(fname) [38;5;28;01mif[39;00m is_nonstr_iter(fname) [38;5;28;01melse[39;00m fname
+[0;32m---> 71[0m     [38;5;28;01mraise[39;00m [38;5;167;01mFileNotFoundError[39;00m([38;5;124mf[39m[38;5;124m"[39m[38;5;124mFile(s) [39m[38;5;124m'[39m[38;5;132;01m{[39;00m_fname[38;5;132;01m}[39;00m[38;5;124m'[39m[38;5;124m not found.[39m[38;5;124m"[39m)
+[1;32m     72[0m [38;5;28;01mcase[39;00m [38;5;241m1[39m:
+[1;32m     73[0m     [38;5;28;01mreturn[39;00m paths[[38;5;241m0[39m]
+
+[0;31mFileNotFoundError[0m: File(s) 'https://iridl.ldeo.columbia.edu/SOURCES/.NOAA/.NODC/.WOA09/.Grid-1x1/.Annual/.temperature/.t_an/data.nc' not found.
+
diff --git a/searchindex.js b/searchindex.js