Merge hdf5 1 10 8

.autom4te.cfg

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

.clang-format

@@ -0,0 +1,96 @@
+---
+Language:        Cpp
+BasedOnStyle:  LLVM
+AlignConsecutiveAssignments: true
+#llvm11: AlignConsecutiveBitFields: false
+AlignConsecutiveDeclarations: true
+AlignConsecutiveMacros: true
+#llvm10-11: AlignOperands:   true - Align
+#llvm11: AllowShortEnumsOnASingleLine: true
+AllowShortFunctionsOnASingleLine: None
+AlwaysBreakAfterReturnType: AllDefinitions
+# Can enable the following section when llvm 12.x is out
+#AttributeMacros:
+#  - H5_ATTR_FORMAT
+#  - H5_ATTR_UNUSED
+#  - H5_ATTR_DEPRECATED_USED
+#  - H5_ATTR_NDEBUG_UNUSED
+#  - H5_ATTR_DEBUG_API_USED
+#  - H5_ATTR_PARALLEL_UNUSED
+#  - H5_ATTR_PARALLEL_USED
+#  - H5_ATTR_NORETURN
+#  - H5_ATTR_CONST
+#  - H5_ATTR_PURE
+#  - H5_ATTR_FALLTHROUGH
+BraceWrapping:
+  AfterFunction:   true
+  #llvm10-11: AfterControlStatement: false - Never
+  BeforeCatch:     true
+  BeforeElse:      true
+  #llvm11:   BeforeLambdaBody: false
+  #llvm11:   BeforeWhile:     false
+BreakBeforeBraces: Stroustrup
+BreakAfterJavaFieldAnnotations: true
+BreakStringLiterals: true
+ColumnLimit:     110    # Update $max_trace_macro_line_len in bin/trace also
+ForEachMacros: ['ALL_MEMBERS', 'UNIQUE_MEMBERS']
+IncludeCategories:
+  - Regex:           '^"(llvm|llvm-c|clang|clang-c)/'
+    Priority:        3
+    SortPriority:    0
+  - Regex:           '^(<|"(gtest|gmock|isl|json)/)'
+    Priority:        4
+    SortPriority:    0
+  - Regex:           '.*'
+    Priority:        0
+    SortPriority:    0
+  - Regex:           '^H5*.*'
+    Priority:        1
+    SortPriority:    0
+  - Regex:           'private.*'
+    Priority:        2
+    SortPriority:    0
+IncludeIsMainRegex: '(public)?$'
+IndentCaseLabels: true
+#llvm11: IndentCaseBlocks: false
+IndentGotoLabels: false
+#llvm11: IndentExternBlock: AfterExternBlock
+IndentWidth:     4
+#llvm11: InsertTrailingCommas: None
+MacroBlockBegin: "^BEGIN_FUNC"
+MacroBlockEnd: "^END_FUNC"
+ObjCBlockIndentWidth: 4
+#llvm11: ObjCBreakBeforeNestedBlockParam: true
+ReflowComments:  true
+SortIncludes:    false
+StatementMacros:
+  - FUNC_ENTER_API
+  - FUNC_LEAVE_API
+  - FUNC_ENTER_NOAPI_NOINIT_NOERR
+  - FUNC_LEAVE_NOAPI
+  - H5_BEGIN_TAG
+  - HGOTO_DONE_TAG
+  - H5_END_TAG
+  - HSYS_DONE_ERROR
+  - HSYS_GOTO_ERROR
+  - HDONE_ERROR
+  - HERROR
+  - H5_LEAVE
+  - H5E_PRINTF
+  - H5E_THROW
+  - HGOTO_DONE
+  - HGOTO_ERROR
+  - HMPI_ERROR
+  - HMPI_DONE_ERROR
+  - HMPI_GOTO_ERROR
+  - H5_GCC_DIAG_OFF
+  - H5_GCC_DIAG_ON
+  - CATCH
+#llvm10: TypenameMacros:
+#llvm10:   - STACK_OF
+#llvm10:   - LIST
+#llvm11: WhitespaceSensitiveMacros:
+#llvm11:   - STRINGIZE
+#llvm11:   - PP_STRINGIZE
+...
+

.gitattributes

@@ -363,6 +363,7 @@ m4/ax_check_rqrd_class.m4 -text
 m4/ax_java_check_class.m4 -text
 m4/ax_java_options.m4 -text
 m4/ax_jni_include_dir.m4 -text
+m4/ax_prog_doxygen.m4 -text
 m4/ax_prog_jar.m4 -text
 m4/ax_prog_java.m4 -text
 m4/ax_prog_java_cc.m4 -text
@@ -782,6 +783,7 @@ tools/testfiles/tints4dimsStride2.ddl -text
 tools/testfiles/tintsattrs.h5 -text svneol=unset#application/x-hdf
 tools/testfiles/tlarge_objname.h5 -text
 tools/testfiles/tldouble.h5 -text
+tools/testfiles/tldouble_scalar.h5 -text
 tools/testfiles/tlonglinks.h5 -text
 tools/testfiles/tloop.h5 -text
 tools/testfiles/tloop2.h5 -text

.github/CODEOWNERS

@@ -0,0 +1,42 @@
+# Lines starting with '#' are comments.
+# Each line is a file pattern followed by one or more owners.
+
+# These owners will be the default owners for everything in the repo.
+*       @lrknox
+
+# Order is important. The last matching pattern has the most precedence.
+# So if a pull request only touches javascript files, only these owners
+# will be requested to review.
+*.cmake           @byrnHDF @derobins
+CMakeLists.txt    @byrnHDF @derobins
+CMakeTests.*      @byrnHDF @derobins
+
+/bin/             @lrknox @derobins
+
+/c++/             @bmribler @byrnHDF @derobins
+
+/config/          @lrknox @derobins @byrnHDF
+
+/doc/             @gnuoyd @jrmainzer
+
+/examples/        @lrknox @derobins @bmribler
+
+/fortran/         @brtnfld @epourmal
+
+/hl/              @bmribler @byrnHDF @derobins
+
+/java/            @jhendersonHDF @byrnHDF
+
+/m4/              @lrknox @derobins
+
+/release_docs/    @lrknox @bmribler @byrnHDF
+
+/src/             @jhendersonHDF @derobins @fortnern @soumagne @vchoi-hdfgroup @jrmainzer
+
+/test/            @jhendersonHDF @derobins @fortnern @soumagne @vchoi-hdfgroup @jrmainzer
+
+/testpar/         @jhendersonHDF @rawarren @jrmainzer
+
+/tools/           @byrnHDF @bmribler @derobins
+
+/utils/           @lrknox @byrnHDF @derobins

.github/workflows/clang-format-check.yml

@@ -0,0 +1,18 @@
+name: clang-format Check
+on:
+  pull_request:
+jobs:
+  formatting-check:
+    name: Formatting Check
+    runs-on: ubuntu-latest
+    if: "!contains(github.event.head_commit.message, 'skip-ci')"
+    steps:
+    - uses: actions/checkout@v2
+    - name: Run clang-format style check for C programs.
+      uses: DoozyX/clang-format-lint-action@v0.11
+      with:
+        source: '.'
+        extensions: 'c,h,cpp,hpp'
+        clangFormatVersion: 10
+        style: file
+        exclude: './config ./hl/src/H5LTanalyze.c ./hl/src/H5LTparse.c ./hl/src/H5LTparse.h ./src/H5Epubgen.h ./src/H5Einit.h ./src/H5Eterm.h ./src/H5Edefin.h ./src/H5version.h ./src/H5overflow.h'

.github/workflows/clang-format-fix.yml

@@ -0,0 +1,25 @@
+name: clang-format Check
+on: 
+  workflow_dispatch:
+  push:
+jobs:
+  formatting-check:
+    name: Formatting Check
+    runs-on: ubuntu-latest
+    if: "!contains(github.event.head_commit.message, 'skip-ci')"
+    steps:
+    - uses: actions/checkout@v2
+    - name: Run clang-format style check for C programs.
+      uses: DoozyX/clang-format-lint-action@v0.11
+      with:
+        source: '.'
+        extensions: 'c,h,cpp,hpp'
+        clangFormatVersion: 10
+        inplace: True
+        style: file
+        exclude: './config ./hl/src/H5LTanalyze.c ./hl/src/H5LTparse.c ./hl/src/H5LTparse.h ./src/H5Epubgen.h ./src/H5Einit.h ./src/H5Eterm.h ./src/H5Edefin.h ./src/H5version.h ./src/H5overflow.h'
+    - uses: EndBug/add-and-commit@v7
+      with:
+          author_name: github-actions
+          author_email: 41898282+github-actions[bot]@users.noreply.github.com
+          message: 'Committing clang-format changes'