Fix issue koppor/jabref#521 (Add feature: allow drag&drop from selected bib entries to other library tabs)

CHANGELOG.md

@@ -16,6 +16,7 @@ Note that this project **does not** adhere to [Semantic Versioning](http://semve
 - We added an extra option in the 'Find Unlinked Files' dialog view to ignore unnecessary files like Thumbs.db, DS_Store, etc. [koppor#373](https://github.com/koppor/jabref/issues/373)
 - JabRef now writes log files. Linux: `$home/.cache/jabref/logs/version`, Windows: `%APPDATA%\..\Local\harawata\jabref\version\logs`, Mac: `Users/.../Library/Logs/jabref/version`
 - We added an importer for Citavi backup files, support ".ctv5bak" and ".ctv6bak" file formats. [#8322](https://github.com/JabRef/jabref/issues/8322)
+- We added a feature about allowing drag selected entries and drop them to other opened inactive library tabs.
 
 ### Changed
 
@@ -34,10 +35,14 @@ Note that this project **does not** adhere to [Semantic Versioning](http://semve
 - We improved group expansion arrow that prevent it from activating group when expanding or collapsing. [#7982](https://github.com/JabRef/jabref/issues/7982), [#3176](https://github.com/JabRef/jabref/issues/3176)
 - When configured SSL certificates changed, JabRef warns the user to restart to apply the configuration.
 - We improved the appearances and logic of the "Manage field names & content" dialog, and renamed it to "Automatic field editor". [#6536](https://github.com/JabRef/jabref/issues/6536)
-- We fixed an issue that caused JabRef to sometimes open multiple instances when "Remote Operation" is enabled. [#8653](https://github.com/JabRef/jabref/issues/8653)
+- We improved the message explaining the options when modifying an automatic keyword group [#8911](https://github.com/JabRef/jabref/issues/8911)
+- We moved the preferences option "Warn about duplicates on import" option from the tab "File" to the tab "Import and Export". [koppor#570](https://github.com/koppor/jabref/issues/570)
+- When JabRef encounters `% Encoding: UTF-8` header, it is kept during writing (and not removed). [#8964](https://github.com/JabRef/jabref/pull/8964)
+- We replace characters which cannot be decoded using the specified encoding by a (probably another) valid character. This happens if JabRef detects the wrong charset (e.g., UTF-8 instead of Windows 1252). One can use the [Integrity Check](https://docs.jabref.org/finding-sorting-and-cleaning-entries/checkintegrity) to find those characters.
 
 ### Fixed
 
+- We fixed an issue that caused JabRef to sometimes open multiple instances when "Remote Operation" is enabled. [#8653](https://github.com/JabRef/jabref/issues/8653)
 - We fixed an issue where linked files with the filetype "application/pdf" in an entry were not shown with the correct PDF-Icon in the main table [8930](https://github.com/JabRef/jabref/issues/8930)
 - We fixed an issue where "open folder" for linked files did not open the folder and did not select the file unter certain Linux desktop environments [#8679](https://github.com/JabRef/jabref/issues/8679), [#8849](https://github.com/JabRef/jabref/issues/8849)
 - We fixed an issue where the content of a big shared database library is not shown [#8788](https://github.com/JabRef/jabref/issues/8788)
@@ -50,6 +55,10 @@ Note that this project **does not** adhere to [Semantic Versioning](http://semve
 - We fixed an issue where the exception that there are invalid characters in filename. [#8786](https://github.com/JabRef/jabref/issues/8786)
 - When the proxy configuration removed the proxy user/password, this change is applied immediately.
 - We fixed an issue where removing several groups deletes only one of them. [#8390](https://github.com/JabRef/jabref/issues/8390)
+- We fixed an issue where the Sidepane (groups, web search and open office) width is not remembered after restarting JabRef. [#8907](https://github.com/JabRef/jabref/issues/8907)
+- We fixed a bug where switching between themes will cause an error/exception. [#8939](https://github.com/JabRef/jabref/pull/8939)
+- We fixed a bug where files that were deleted in the source bibtex file were kept in the index. [#8962](https://github.com/JabRef/jabref/pull/8962)
+- We fixed "Error while sending to JabRef" when the browser extension interacts with JabRef. [JabRef-Browser-Extension#479](https://github.com/JabRef/JabRef-Browser-Extension/issues/479)
 
 ### Removed
 

build.gradle

@@ -100,7 +100,7 @@ dependencyLocking {
 }
 
 javafx {
-    version = "18"
+    version = "18.0.1"
     modules = [ 'javafx.controls', 'javafx.fxml', 'javafx.web', 'javafx.swing' ]
 }
 
@@ -127,7 +127,6 @@ dependencies {
     implementation 'com.h2database:h2-mvstore:2.1.214'
 
     implementation group: 'org.apache.tika', name: 'tika-core', version: '2.4.1'
-    implementation 'com.ibm.icu:icu4j-charset:71.1'
 
     // required for reading write-protected PDFs - see https://github.com/JabRef/jabref/pull/942#issuecomment-209252635
     implementation 'org.bouncycastle:bcprov-jdk18on:1.71'
@@ -151,7 +150,7 @@ dependencies {
     implementation group: 'com.fasterxml.jackson.dataformat', name: 'jackson-dataformat-yaml', version: '2.13.3'
     implementation group: 'com.fasterxml.jackson.datatype', name: 'jackson-datatype-jsr310', version: '2.13.3'
 
-    implementation group: 'org.mariadb.jdbc', name: 'mariadb-java-client', version: '2.7.5'
+    implementation group: 'org.mariadb.jdbc', name: 'mariadb-java-client', version: '2.7.6'
 
     implementation 'org.postgresql:postgresql:42.4.0'
 
@@ -208,7 +207,7 @@ dependencies {
 
     implementation group: 'net.harawata', name: 'appdirs', version: '1.2.1'
 
-    testImplementation 'io.github.classgraph:classgraph:4.8.147'
+    testImplementation 'io.github.classgraph:classgraph:4.8.149'
     testImplementation 'org.junit.jupiter:junit-jupiter:5.8.2'
     testImplementation 'org.junit.platform:junit-platform-launcher:1.8.2'
 
@@ -221,7 +220,7 @@ dependencies {
     testImplementation "org.testfx:testfx-junit5:4.0.16-alpha"
     testImplementation "org.hamcrest:hamcrest-library:2.2"
 
-    checkstyle 'com.puppycrawl.tools:checkstyle:10.1'
+    checkstyle 'com.puppycrawl.tools:checkstyle:10.3.1'
     // xjc needs the runtime as well for the ant task, otherwise it fails
     xjc group: 'org.glassfish.jaxb', name: 'jaxb-xjc', version: '3.0.2'
     xjc group: 'org.glassfish.jaxb', name: 'jaxb-runtime', version: '3.0.2'

buildres/csl/csl-locales/.github/workflows/merge.yaml

@@ -19,9 +19,9 @@ jobs:
       GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
       DISTRIBUTION_UPDATER_TOKEN: "${{ secrets.DISTRIBUTION_UPDATER_TOKEN }}"
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
       if: github.event_name == 'push'
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
       if: github.event_name == 'workflow_dispatch'
       with:
         fetch-depth: 0
@@ -30,7 +30,7 @@ jobs:
       id: release
       run: echo ::set-output name=branch::v1.0.2
     - name: Checkout release branch
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
       with:
         ref: ${{ steps.release.outputs.branch }}
         path: './release'
@@ -63,7 +63,7 @@ jobs:
         ruby-version: 3.0.2
     - name: but use cache to speed that up
       if: github.event_name == 'workflow_dispatch' || (github.event_name == 'push' && (steps.update.outputs.updated == 'true' || steps.update.outputs.deleted == 'true'))
-      uses: actions/cache@v2
+      uses: actions/cache@v3
       with:
         path: vendor/bundle
         key: ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }}

buildres/csl/csl-locales/.github/workflows/sheldon.yaml

@@ -15,17 +15,17 @@ jobs:
     # labels to a PR
     # https://securitylab.github.com/research/github-actions-preventing-pwn-requests
     - name: Checkout repo for OWNER TEST
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
       if: contains(github.event.pull_request.labels.*.name, 'safe to test')
       with:
         ref: ${{ github.event.pull_request.head.ref }}
 
     # otherwise, checkout the current master, and the pr to the subdirectory 'pull-request'
     - name: Checkout base repo for pull-request test
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
       if: "! contains(github.event.pull_request.labels.*.name, 'safe to test')"
     - name: Checkout pull-request
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
       if: "! contains(github.event.pull_request.labels.*.name, 'safe to test')"
       with:
         repository: ${{ github.event.pull_request.head.repo.full_name }}
@@ -54,7 +54,7 @@ jobs:
       with:
         ruby-version: 3.0.2
     - name: but use cache to speed that up
-      uses: actions/cache@v2
+      uses: actions/cache@v3
       with:
         path: vendor/bundle
         key: ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }}

buildres/csl/csl-locales/Gemfile.lock

@@ -33,7 +33,7 @@ GEM
     csl-styles (2.0.0)
       csl (~> 2.0)
     diff-lcs (1.5.0)
-    diffy (3.4.0)
+    diffy (3.4.2)
     dotenv (2.7.6)
     erubis (2.7.0)
     faraday (1.8.0)

buildres/csl/csl-styles/.github/dependabot.yml

@@ -0,0 +1,6 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"

buildres/csl/csl-styles/.github/workflows/merge.yaml

@@ -19,9 +19,9 @@ jobs:
       GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
       DISTRIBUTION_UPDATER_TOKEN: "${{ secrets.DISTRIBUTION_UPDATER_TOKEN }}"
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
       if: github.event_name == 'push'
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
       if: github.event_name == 'workflow_dispatch'
       with:
         fetch-depth: 0
@@ -30,7 +30,7 @@ jobs:
       id: release
       run: echo ::set-output name=branch::v1.0.2
     - name: Checkout release branch
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
       with:
         ref: ${{ steps.release.outputs.branch }}
         path: './release'
@@ -63,7 +63,7 @@ jobs:
         ruby-version: 3.0.2
     - name: but use cache to speed that up
       if: github.event_name == 'workflow_dispatch' || (github.event_name == 'push' && (steps.update.outputs.updated == 'true' || steps.update.outputs.deleted == 'true'))
-      uses: actions/cache@v2
+      uses: actions/cache@v3
       with:
         path: vendor/bundle
         key: ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }}

buildres/csl/csl-styles/.github/workflows/sheldon.yaml

@@ -15,17 +15,17 @@ jobs:
     # labels to a PR
     # https://securitylab.github.com/research/github-actions-preventing-pwn-requests
     - name: Checkout repo for OWNER TEST
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
       if: contains(github.event.pull_request.labels.*.name, 'safe to test')
       with:
         ref: ${{ github.event.pull_request.head.ref }}
 
     # otherwise, checkout the current master, and the pr to the subdirectory 'pull-request'
     - name: Checkout base repo for pull-request test
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
       if: "! contains(github.event.pull_request.labels.*.name, 'safe to test')"
     - name: Checkout pull-request
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
       if: "! contains(github.event.pull_request.labels.*.name, 'safe to test')"
       with:
         repository: ${{ github.event.pull_request.head.repo.full_name }}
@@ -54,7 +54,7 @@ jobs:
       with:
         ruby-version: 3.0.2
     - name: but use cache to speed that up
-      uses: actions/cache@v2
+      uses: actions/cache@v3
       with:
         path: vendor/bundle
         key: ${{ runner.os }}-gems-${{ hashFiles('**/Gemfile.lock') }}

buildres/csl/csl-styles/Gemfile.lock

@@ -33,7 +33,7 @@ GEM
     csl-styles (2.0.0)
       csl (~> 2.0)
     diff-lcs (1.5.0)
-    diffy (3.4.0)
+    diffy (3.4.2)
     dotenv (2.7.6)
     erubis (2.7.0)
     faraday (1.8.0)

buildres/csl/csl-styles/advanced-materials.csl

@@ -5,7 +5,7 @@
     <id>http://www.zotero.org/styles/advanced-materials</id>
     <link href="http://www.zotero.org/styles/advanced-materials" rel="self"/>
     <link href="http://www.zotero.org/styles/small" rel="template"/>
-    <link href="http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291521-4095/homepage/2089_authorresources.html" rel="documentation"/>
+    <link href="https://onlinelibrary.wiley.com/page/journal/15214095/homepage/author-guidelines" rel="documentation"/>
     <author>
       <name>Jimmy Lawrence</name>
       <email>jimmymisc@gmail.com</email>
@@ -16,13 +16,13 @@
     <issn>0935-9648</issn>
     <eissn>1521-4095</eissn>
     <summary>A style for Wiley's Advanced Materials</summary>
-    <updated>2012-09-27T22:06:38+00:00</updated>
+    <updated>2022-06-22T14:43:19+00:00</updated>
     <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
   </info>
   <macro name="author">
     <names variable="author">
       <name initialize-with=". " delimiter=", " delimiter-precedes-last="always"/>
-      <label form="short" prefix=", " text-case="capitalize-first" suffix=" "/>
+      <label form="short" text-case="capitalize-first" prefix=", "/>
       <substitute>
         <names variable="editor"/>
         <names variable="translator"/>
@@ -32,7 +32,7 @@
   <macro name="editor">
     <names variable="editor">
       <label form="short" text-case="capitalize-first" suffix=".: " strip-periods="true"/>
-      <name initialize-with="." delimiter=", " delimiter-precedes-last="always"/>
+      <name delimiter-precedes-last="always" initialize-with=". "/>
     </names>
   </macro>
   <macro name="year-date">
@@ -124,7 +124,7 @@
             <text macro="year-date"/>
           </group>
         </else-if>
-        <else-if type="webpage">
+        <else-if type="webpage post post-weblog" match="any">
           <group delimiter=", ">
             <text variable="title" quotes="true"/>
             <text macro="access"/>

buildres/csl/csl-styles/american-society-for-horticultural-science.csl

@@ -13,7 +13,7 @@
     <category citation-format="author-date"/>
     <category field="biology"/>
     <category field="botany"/>
-    <updated>2021-07-27T13:34:10+00:00</updated>
+    <updated>2022-06-14T08:25:19+00:00</updated>
     <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
   </info>
   <macro name="edition">
@@ -32,11 +32,13 @@
   <macro name="container">
     <choose>
       <if type="chapter paper-conference" match="any">
-        <text term="in" text-case="capitalize-first" font-style="italic" prefix=". " suffix=" "/>
-        <names variable="editor translator" delimiter=", " suffix=". ">
-          <name initialize-with="." delimiter=", " delimiter-precedes-last="never" and="symbol"/>
-          <label form="short" prefix=" (" suffix=")"/>
-        </names>
+        <group delimiter=": ">
+          <text term="in" text-case="capitalize-first" font-style="normal" prefix=". " suffix=" "/>
+          <names variable="editor translator" delimiter=", " suffix=". ">
+            <name initialize-with="." delimiter=", " delimiter-precedes-last="never" and="symbol"/>
+            <label form="short" prefix=" (" suffix=")"/>
+          </names>
+        </group>
         <group delimiter=", ">
           <text variable="container-title" text-case="title"/>
           <text variable="collection-title" text-case="title"/>
@@ -49,7 +51,7 @@
         </group>
       </else-if>
       <else>
-        <group prefix=". " delimiter=", ">
+        <group delimiter=", " prefix=". ">
           <text variable="container-title" form="short"/>
           <text variable="collection-title"/>
         </group>
@@ -86,14 +88,7 @@
     </names>
   </macro>
   <macro name="access">
-    <choose>
-      <if type="webpage">
-        <group>
-          <text value="URL" suffix=" "/>
-          <text variable="URL"/>
-        </group>
-      </if>
-    </choose>
+    <text variable="URL" prefix="&lt;" suffix="&gt;"/>
   </macro>
   <macro name="title">
     <choose>
@@ -106,10 +101,6 @@
           </group>
         </group>
       </if>
-      <else-if type="webpage">
-        <text variable="title"/>
-        <text value="WWW Document" prefix=" [" suffix="]"/>
-      </else-if>
       <else>
         <text variable="title"/>
       </else>
@@ -173,13 +164,13 @@
       </if>
       <else-if type="bill book graphic legal_case legislation motion_picture report song thesis" match="any">
         <group delimiter=", " prefix=". ">
+          <text macro="edition"/>
+          <text macro="event"/>
+          <text macro="publisher"/>
           <group>
             <text variable="genre"/>
             <text variable="number" prefix=" No. "/>
           </group>
-          <text macro="edition"/>
-          <text macro="event"/>
-          <text macro="publisher"/>
         </group>
       </else-if>
       <else-if type="chapter paper-conference" match="any">
@@ -188,15 +179,21 @@
           <text macro="publisher"/>
         </group>
       </else-if>
+      <else-if type="webpage post post-weblog" match="any">
+        <group delimiter=". " prefix=". ">
+          <date form="text" date-parts="year-month-day" variable="issued"/>
+          <text macro="access"/>
+        </group>
+      </else-if>
     </choose>
   </macro>
   <citation et-al-min="3" et-al-use-first="1" disambiguate-add-year-suffix="true" disambiguate-add-names="true" collapse="year">
     <sort>
-      <key macro="issued"/>
       <key macro="author"/>
+      <key macro="issued"/>
     </sort>
-    <layout prefix="(" suffix=")" delimiter=", ">
-      <group delimiter=" ">
+    <layout delimiter="; " prefix="(" suffix=")">
+      <group delimiter=", ">
         <text macro="author-short"/>
         <text macro="issued"/>
       </group>
@@ -217,7 +214,6 @@
         </group>
         <text macro="locators"/>
       </group>
-      <text macro="access" prefix=". "/>
     </layout>
   </bibliography>
 </style>