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@HKU-BAL

HKUCS Bioinformatics Algorithms and Core Technology Research Laboratory

Research group led by Ruibang Luo in Computer Science, The University of Hong Kong

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  1. Clair3 Clair3 Public

    Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

    Python 250 30

  2. ClairS ClairS Public

    ClairS - a deep-learning method for long-read somatic small variant calling

    Python 78 7

  3. ClairS-TO ClairS-TO Public

    ClairS-TO - a deep-learning method for tumor-only somatic variant calling

    Python 54 3

Repositories

Showing 10 of 32 repositories
  • Clair3-RNA Public

    Clair3-RNA - a long-read small variant caller for RNA sequencing data

    HKU-BAL/Clair3-RNA’s past year of commit activity
    Python 18 BSD-3-Clause 1 1 0 Updated Dec 17, 2024
  • TC-RENO Public

    A tool to detect full length isoforms of RNA

    HKU-BAL/TC-RENO’s past year of commit activity
    Python 3 3 0 0 Updated Dec 14, 2024
  • ClusterV Public

    ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data

    HKU-BAL/ClusterV’s past year of commit activity
    Python 11 BSD-3-Clause 0 1 0 Updated Dec 13, 2024
  • Clair3 Public

    Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

    HKU-BAL/Clair3’s past year of commit activity
    Python 250 30 10 0 Updated Dec 12, 2024
  • ClairS-TO Public

    ClairS-TO - a deep-learning method for tumor-only somatic variant calling

    HKU-BAL/ClairS-TO’s past year of commit activity
    Python 54 BSD-3-Clause 3 3 0 Updated Dec 2, 2024
  • ClairS Public

    ClairS - a deep-learning method for long-read somatic small variant calling

    HKU-BAL/ClairS’s past year of commit activity
    Python 78 BSD-3-Clause 7 4 0 Updated Dec 1, 2024
  • AutoPM3 Public
    HKU-BAL/AutoPM3’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 4, 2024
  • Clair3-Nova Public

    de novo variant calling in trio using Nanopore long-reads

    HKU-BAL/Clair3-Nova’s past year of commit activity
    Python 9 BSD-3-Clause 0 1 0 Updated Nov 1, 2024
  • msdb-flask Public

    Mirtronstructdb: A comprehensive database of mirtrons with predicted secondary structures

    HKU-BAL/msdb-flask’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jul 28, 2024
  • Governome Public

    Governome - Towards a new standard in genomic data privacy: a realization of owner-governance

    HKU-BAL/Governome’s past year of commit activity
    Go 3 BSD-3-Clause 0 0 0 Updated Jul 21, 2024
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