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HLWiencko/SalmonellaAssembly
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File list: Reference genome used for read mapping: SL1344_reference.fa De novo assembled genomes contiguated with ABACAS: velvetLinear.fasta spadesLinear.fasta De novo assembled consensus sequence from Geneious: geneious.fasta Variants called against this reference (using samtools) in: variants/ Variants called with samtools, mapping sequence reads against the two assemblies and the reference: velvet.samtools.vcf spades.samtools.vcf ref.samtools.vcf
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de novo genome assembly for Salmonella SL1344 with swapped ORFs hns and stp
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