docs: add apt install command loading Ubuntu system requirements
#124
Workflow file for this run
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| name: eCLM CI Test | |
| # Controls when the action will run. | |
| on: [push, pull_request] | |
| jobs: | |
| eclm_build_job: | |
| name: ${{ matrix.config.name }} | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| config: | |
| - { | |
| name: "eCLM-Standalone", | |
| use_oasis: "False", | |
| coup_oas_icon: "False", | |
| coup_oas_pfl: "False", | |
| use_pdaf: "False" | |
| } | |
| - { | |
| name: "eCLM-ParFlow-ICON", | |
| use_oasis: "True", | |
| coup_oas_icon: "True", | |
| coup_oas_pfl: "True", | |
| use_pdaf: "False" | |
| } | |
| - { | |
| name: "eCLM-PDAF", | |
| use_oasis: "False", | |
| coup_oas_icon: "False", | |
| coup_oas_pfl: "False", | |
| use_pdaf: "True" | |
| } | |
| env: | |
| CC: mpicc | |
| FC: mpifort | |
| BUILD_DIR: bld | |
| INSTALL_DIR: install | |
| CMAKE_BUILD_PARALLEL_LEVEL: 4 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: awalsh128/cache-apt-pkgs-action@latest | |
| with: | |
| packages: libxml2-utils pylint wget cmake netcdf-bin libnetcdf-dev libnetcdff-dev libpnetcdf-dev | |
| version: 1.0 | |
| execute_install_scripts: true | |
| - name: Download MPI Fortran compiler | |
| run: sudo apt-get install gfortran openmpi-bin libopenmpi-dev | |
| - if: matrix.config.use_oasis == 'True' | |
| name: Cache OASIS3-MCT | |
| uses: actions/cache@v4 | |
| id: cache-deps | |
| env: | |
| cache-name: cache-eCLM-dependencies | |
| with: | |
| path: "~/.local" | |
| key: cache-${{ matrix.config.name }} | |
| - if: matrix.config.use_oasis == 'True' && steps.cache-deps.outputs.cache-hit != 'true' | |
| name: Install OASIS3-MCT | |
| run: | | |
| git clone https://icg4geo.icg.kfa-juelich.de/ExternalReposPublic/oasis3-mct.git | |
| cd oasis3-mct | |
| export OASIS_ROOT=$(pwd) | |
| echo "OASIS_ROOT=${OASIS_ROOT}" | |
| echo "DEPENDENCIES_DIR=${DEPENDENCIES_DIR}" | |
| cd util/make_dir | |
| echo "include ${GITHUB_WORKSPACE}/.github/build.oasis3-mct.ubuntu22.04" > make.inc | |
| cat make.inc | |
| make realclean static-libs -f TopMakefileOasis3 | |
| - name: Configure eCLM | |
| run: | | |
| cmake -S src -B $BUILD_DIR \ | |
| -DCMAKE_BUILD_TYPE="RELEASE" \ | |
| -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR \ | |
| -DCMAKE_PREFIX_PATH="$HOME/.local" \ | |
| -DCMAKE_C_COMPILER=$CC \ | |
| -DCMAKE_Fortran_COMPILER=$FC \ | |
| -DUSE_OASIS=${{ matrix.config.use_oasis }} \ | |
| -DCOUP_OAS_ICON=${{ matrix.config.coup_oas_icon }} \ | |
| -DCOUP_OAS_PFL=${{ matrix.config.coup_oas_pfl }} \ | |
| -DUSE_PDAF=${{ matrix.config.use_pdaf }} | |
| - name: Build eCLM | |
| run: cmake --build $BUILD_DIR | |
| - name: Install eCLM | |
| run: cmake --install $BUILD_DIR | |
| - name: Install eCLM namelist generator | |
| run: pip3 install --user ./namelist_generator |