Functional CMake build scripts #1
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* Imported CMake modules required by PIO1 from https://github.com/ESMCI/cime/tree/cime5.6.33/src/externals/pio2/cmake * Imported genf90.pl (a Fortran preprocessor script) from https://github.com/ESMCI/cime/blob/cime5.6.33/src/externals/genf90/genf90.pl * Added install step to PIO1 CMakeLists.txt * Created build script for Ubuntu 20.04LTS
…_Add Set BUILD_ALWAYS=YES for gptl and mct to ensure libraries get rebuilt when source files are modified.
Also, imported required include files from https://github.com/ESMCI/cime/tree/cime5.6.33/src/share/include
…m5 build work, and set global compile defs and flags.
Resolved cesm compile failures by fixing CMake scripts for clm5, datm, mosart, and stub_comps
…0.04LTS * gptl: Added compile def -DFORTRANUNDERSCORE to fix linker failures due to unresolved gptl functions (e.g. "undefined reference to `gptlstart_") * mct: Specified expected output static libraries * csm_share: Added missing source file shr_reprosumx86.c. Arranged sources in alphabetical order for readability * clm5: Added dependency to LAPACK. Used a more robust FindLAPACK.cmake module taken from https://github.com/scivision/lapack-cmake-meson/blob/02c08a55ed3a2e304923bb3f97d7114d50557a6d/cmake/Modules/FindLAPACK.cmake
kvrigor
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Mar 11, 2021
Created CMake build scripts. Build succeeds on local dev machine (Ubuntu 20.04 LTS) and JUWELS (CentOS 8).
kvrigor
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Aug 25, 2023
Error message for "Map Grid Size mismatch error" ``` MCT::oas_m_ExchangeMaps::ExGSMapGSMap_:: MCTERROR, Grid Size mismatch LocalMap Gsize = 199920 RemoteMap Gsize = 108550 MCT::oas_m_ExchangeMaps::ExGSMapGSMap_: Map Grid Size mismatch error, stat =3 000.MCT(MPEU)::die.: from MCT::oas_m_ExchangeMaps::ExGSMapGSMap_() application called MPI_Abort(MPI_COMM_WORLD, 2) - process 0 p_Abort(r0): aborting on users request MCT::oas_m_ExchangeMaps::ExGSMapGSMap_:: MCTERROR, Grid Size mismatch LocalMap Gsize = 108550 RemoteMap Gsize = 199920 MCT::oas_m_ExchangeMaps::ExGSMapGSMap_: Map Grid Size mismatch error, stat =3 0F0.MCT(MPEU)::die.: from MCT::oas_m_ExchangeMaps::ExGSMapGSMap_() application called MPI_Abort(MPI_COMM_WORLD, 2) - process 240 p_Abort(r240): aborting on users request forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source icon 0000000001BBFC6B Unknown Unknown Unknown libpthread-2.28.s 000014ED77C4FCF0 Unknown Unknown Unknown libpthread-2.28.s 000014ED77C4EAB2 __read Unknown Unknown libmpi.so.12.1.12 000014ED5E9831DF Unknown Unknown Unknown libmpi.so.12.1.12 000014ED5E986FA2 Unknown Unknown Unknown libmpi.so.12.1.12 000014ED5E9595A5 Unknown Unknown Unknown libmpi.so.12.1.12 000014ED5E816647 PMPI_Abort Unknown Unknown libmpifort.so.12. 000014ED78BEBA2D mpi_abort Unknown Unknown icon 0000000001B249C4 Unknown Unknown Unknown icon 0000000001B23BA4 Unknown Unknown Unknown icon 0000000001AFF0B2 Unknown Unknown Unknown icon 0000000001AE1D7A Unknown Unknown Unknown icon 0000000001935755 Unknown Unknown Unknown icon 0000000001992025 Unknown Unknown Unknown icon 000000000042B411 mo_atmo_model_mp_ 304 mo_atmo_model.f90 icon 00000000004173DB MAIN__ 229 icon.f90 icon 0000000000416FE2 Unknown Unknown Unknown libc-2.28.so 000014ED6E792D85 __libc_start_main Unknown Unknown icon 0000000000416EEE Unknown Unknown Unknown ``` Error message for "array PARTITION error" ``` forrtl: severe (408): fort: (2): Subscript #1 of the array PARTITION has value 201 which is greater than the upper bound of 200 Image PC Routine Line Source eclm.exe 0000000003F54CAF Unknown Unknown Unknown eclm.exe 000000000104F11F oas_definemod_mp_ 58 oas_defineMod.F90 eclm.exe 00000000007FA4BD lnd_comp_mct_mp_l 242 lnd_comp_mct.F90 eclm.exe 0000000000469837 component_mod_mp_ 267 component_mod.F90 eclm.exe 000000000042CCB9 cime_comp_mod_mp_ 1252 cime_comp_mod.F90 eclm.exe 000000000045F80C MAIN__ 114 cime_driver.F90 eclm.exe 000000000041AB62 Unknown Unknown Unknown libc-2.28.so 00001521FB380D85 __libc_start_main Unknown Unknown eclm.exe 000000000041AA6E Unknown Unknown Unknown ```
kvrigor
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Aug 25, 2023
Error message for "Map Grid Size mismatch error" ``` MCT::oas_m_ExchangeMaps::ExGSMapGSMap_:: MCTERROR, Grid Size mismatch LocalMap Gsize = 199920 RemoteMap Gsize = 108550 MCT::oas_m_ExchangeMaps::ExGSMapGSMap_: Map Grid Size mismatch error, stat =3 000.MCT(MPEU)::die.: from MCT::oas_m_ExchangeMaps::ExGSMapGSMap_() application called MPI_Abort(MPI_COMM_WORLD, 2) - process 0 p_Abort(r0): aborting on users request MCT::oas_m_ExchangeMaps::ExGSMapGSMap_:: MCTERROR, Grid Size mismatch LocalMap Gsize = 108550 RemoteMap Gsize = 199920 MCT::oas_m_ExchangeMaps::ExGSMapGSMap_: Map Grid Size mismatch error, stat =3 0F0.MCT(MPEU)::die.: from MCT::oas_m_ExchangeMaps::ExGSMapGSMap_() application called MPI_Abort(MPI_COMM_WORLD, 2) - process 240 p_Abort(r240): aborting on users request forrtl: error (78): process killed (SIGTERM) Image PC Routine Line Source icon 0000000001BBFC6B Unknown Unknown Unknown libpthread-2.28.s 000014ED77C4FCF0 Unknown Unknown Unknown libpthread-2.28.s 000014ED77C4EAB2 __read Unknown Unknown libmpi.so.12.1.12 000014ED5E9831DF Unknown Unknown Unknown libmpi.so.12.1.12 000014ED5E986FA2 Unknown Unknown Unknown libmpi.so.12.1.12 000014ED5E9595A5 Unknown Unknown Unknown libmpi.so.12.1.12 000014ED5E816647 PMPI_Abort Unknown Unknown libmpifort.so.12. 000014ED78BEBA2D mpi_abort Unknown Unknown icon 0000000001B249C4 Unknown Unknown Unknown icon 0000000001B23BA4 Unknown Unknown Unknown icon 0000000001AFF0B2 Unknown Unknown Unknown icon 0000000001AE1D7A Unknown Unknown Unknown icon 0000000001935755 Unknown Unknown Unknown icon 0000000001992025 Unknown Unknown Unknown icon 000000000042B411 mo_atmo_model_mp_ 304 mo_atmo_model.f90 icon 00000000004173DB MAIN__ 229 icon.f90 icon 0000000000416FE2 Unknown Unknown Unknown libc-2.28.so 000014ED6E792D85 __libc_start_main Unknown Unknown icon 0000000000416EEE Unknown Unknown Unknown ``` Error message for "array PARTITION error" ``` forrtl: severe (408): fort: (2): Subscript #1 of the array PARTITION has value 201 which is greater than the upper bound of 200 Image PC Routine Line Source eclm.exe 0000000003F54CAF Unknown Unknown Unknown eclm.exe 000000000104F11F oas_definemod_mp_ 58 oas_defineMod.F90 eclm.exe 00000000007FA4BD lnd_comp_mct_mp_l 242 lnd_comp_mct.F90 eclm.exe 0000000000469837 component_mod_mp_ 267 component_mod.F90 eclm.exe 000000000042CCB9 cime_comp_mod_mp_ 1252 cime_comp_mod.F90 eclm.exe 000000000045F80C MAIN__ 114 cime_driver.F90 eclm.exe 000000000041AB62 Unknown Unknown Unknown libc-2.28.so 00001521FB380D85 __libc_start_main Unknown Unknown eclm.exe 000000000041AA6E Unknown Unknown Unknown ```
jjokella
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Jul 25, 2024
because of error ``` forrtl: severe (408): fort: (3): Subscript #1 of the array LND_RESUME has value 0 which is less than the lower bound of 1 ```
jjokella
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Jul 26, 2024
``` :error #5561: Subscript #1 of the array LND_RESUME has value 0 which is less than the lower bound of 1 write(iulog,*) 'eCLM(lnd_comp_mct): iam, lnd_resume(0) ', iam, lnd_resume(0) ```
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Created CMake build scripts. Build succeeds on local dev machine (Ubuntu 20.04 LTS) and JUWELS (CentOS 8).