PDAF: put PDAF-related commands under USE_PDAF condition
#25
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| name: ParFlow MacOS CI Test | |
| # | |
| # Notes | |
| # Currently using GCC for the build rather than Clang | |
| # Python 3.12 used rather than more current available versions since Numba library does not work with later versions | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| # fail-fast: true | |
| matrix: | |
| config: | |
| - { | |
| name: "MacOS 14", | |
| os: macos-14, | |
| cudaos: '', | |
| python: "true", | |
| backend: "none", | |
| amps_layer: mpi1, | |
| netcdf: "true" | |
| } | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: gcc | |
| - uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: openmpi | |
| - name: HDF5 Install | |
| run: | | |
| # pkg-config formula is deprecated but it's still installed | |
| # in GitHub Actions runner now. We can remove this once | |
| # pkg-config formula is removed from GitHub Actions runner. | |
| brew uninstall pkg-config@0.29.2 | |
| brew install hdf5-mpi | |
| # Cache dependencies so don't have to rebuild on each test. | |
| # Can flush caches by resetting the CACHE_VERSION secret on GitHub | |
| # settings for the project (using date-timestamp for secret). | |
| - name: Cache dependencies | |
| uses: actions/cache@v4 | |
| id: cache-parflow-dependencies | |
| env: | |
| cache-name: cache-parflow-dependencies | |
| cache-parflow-hit: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | |
| with: | |
| path: "~/depend" | |
| key: cache-${{ matrix.config.os }}-${{ matrix.config.backend }}-${{ secrets.CACHE_VERSION }} | |
| - name: Directory Setup | |
| run: | | |
| mkdir -p $HOME/install | |
| echo "PARFLOW_DIR=$HOME/install" >> $GITHUB_ENV | |
| echo "Setting PARFLOW_DIR=$HOME/install" | |
| mkdir -p $HOME/depend/{include,lib} | |
| echo "PARFLOW_DEP_DIR=$HOME/depend" >> $GITHUB_ENV | |
| echo "Setting PARFLOW_DEP_DIR=$HOME/depend" | |
| echo "PARFLOW_DEP_DIR=$HOME/depend" >> $GITHUB_ENV | |
| echo "$HOME/depend/bin" >> $GITHUB_PATH | |
| export LD_LIBRARY_PATH=${PARFLOW_DEP_DIR}/lib64:${PARFLOW_DEP_DIR}/lib:${LD_LIBRARY_PATH} | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" >> $GITHUB_ENV | |
| export PARFLOW_PYTHON3=/opt/homebrew/bin/python3.12 | |
| echo "PARFLOW_PYTHON3=${PARFLOW_PYTHON3}" >> $GITHUB_ENV | |
| - name: CMake Install | |
| if: matrix.config.os != 'macos-14' | |
| env: | |
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | |
| run: | | |
| if [[ "$CACHE_HIT" != 'true' ]]; then | |
| echo "Installing" | |
| cd ~/depend | |
| echo "cache-${{ matrix.config.os }}-${{ matrix.config.backend }}-${{ secrets.CACHE_VERSION }}" > ~/depend/cache-key | |
| wget -nv --no-check-certificate https://github.com/Kitware/CMake/releases/download/v3.25.1/cmake-3.25.1-linux-x86_64.tar.gz | |
| tar -xf cmake-3.25.1-linux-x86_64.tar.gz | |
| $HOME/depend/cmake-3.25.1-linux-x86_64/bin/cmake --version | |
| fi | |
| echo "$HOME/depend/cmake-3.25.1-linux-x86_64/bin" >> $GITHUB_PATH | |
| # Package netcdf is missing features needed by the ParFlow writers, build from source | |
| # netcdf is True when we want to build the PF NetCDF writer. | |
| - name: NetCDF Install | |
| env: | |
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | |
| if: matrix.config.netcdf == 'true' | |
| run: | | |
| if [[ "$CACHE_HIT" != 'true' ]]; then | |
| URL=https://github.com/Unidata/netcdf-c/archive/v4.9.0.tar.gz | |
| mkdir netcdf-c | |
| cd netcdf-c | |
| curl -L $URL | tar --strip-components=1 -xz | |
| CC=mpicc CPPFLAGS=-I/opt/homebrew/include LDFLAGS=-L/opt/homebrew/lib/ ./configure --prefix=$PARFLOW_DEP_DIR | |
| make | |
| make install | |
| cd .. | |
| URL=https://github.com/Unidata/netcdf-fortran/archive/v4.5.4.tar.gz | |
| mkdir netcdf-fortran | |
| cd netcdf-fortran | |
| curl -L $URL | tar --strip-components=1 -xz | |
| CC=mpicc FC=mpifort CPPFLAGS=-I${PARFLOW_DEP_DIR}/include LDFLAGS=-L${PARFLOW_DEP_DIR}/lib ./configure --prefix=${PARFLOW_DEP_DIR} | |
| make | |
| make install | |
| fi | |
| echo "NETCDF_FLAGS=-DNETCDF_DIR=$PARFLOW_DEP_DIR -DPARFLOW_ENABLE_HDF5=TRUE" >> $GITHUB_ENV | |
| - name: SILO Install | |
| env: | |
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | |
| run: | | |
| if [[ "$CACHE_HIT" != 'true' ]]; then | |
| URL=https://github.com/LLNL/Silo/archive/refs/tags/4.11.tar.gz | |
| mkdir silo | |
| cd silo | |
| curl -L $URL | tar --strip-components=1 -xz | |
| ./configure --disable-silex --disable-hzip --disable-fpzip --prefix=$PARFLOW_DEP_DIR --disable-fortran --with-readline=no | |
| make -j 2 install | |
| fi | |
| - name: HYPRE Install | |
| env: | |
| CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}} | |
| run: | | |
| if [[ "$CACHE_HIT" != 'true' ]]; then | |
| URL=https://github.com/hypre-space/hypre/archive/v2.26.0.tar.gz | |
| mkdir hypre | |
| cd hypre | |
| curl -L $URL | tar --strip-components=1 -xz | |
| cd src | |
| CC=mpicc CXX=mpic++ FC=mpif77 F77=mpif90 ./configure --prefix=$PARFLOW_DEP_DIR | |
| make -j 2 install | |
| fi | |
| - name: ParFlow CMake Configure | |
| run: | | |
| mpicc -v | |
| if [[ "${{ matrix.config.amps_layer }}" == "oas3" ]]; then HAVE_CLM="OFF"; else HAVE_CLM="ON"; fi | |
| # SGS 2024-11-22 Had to hack in homebrew file paths for TCL. Why are links not in /opt/homebrew/bin and lib anymore? | |
| # Why can't we get TCL paths from pkgconf? | |
| CC=mpicc CXX=mpicxx F77=mpif77 FC=mpif90 cmake -Bbuild -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_FLAGS="-Wall -Werror -Wno-unused-result -Wno-unused-function" -DPARFLOW_ENABLE_TIMING=TRUE -DPARFLOW_AMPS_LAYER=${{ matrix.config.amps_layer }} -DPARFLOW_ACCELERATOR_BACKEND=${{ matrix.config.backend }} -DPARFLOW_AMPS_SEQUENTIAL_IO=true -DPARFLOW_HAVE_CLM=${HAVE_CLM} -DHYPRE_ROOT=$PARFLOW_DEP_DIR -DOAS3_ROOT=$PARFLOW_DEP_DIR -DSILO_ROOT=$PARFLOW_DEP_DIR -DPARFLOW_ENABLE_PYTHON=${{ matrix.config.python }} $NETCDF_FLAGS $KOKKOS_FLAGS $RMM_FLAGS -DCMAKE_INSTALL_PREFIX=$PARFLOW_DIR -DTCL_INCLUDE_PATH=/opt/homebrew/bin/usr/include -DTCL_LIBRARY=/opt/homebrew/Cellar/tcl-tk@8/8.6.15/lib/libtcl8.6.dylib -DTCL_TCLSH=/opt/homebrew/Cellar/tcl-tk@8/8.6.15/bin/tclsh8.6 -DPython3_EXECUTABLE=$PARFLOW_PYTHON3 | |
| - name: ParFlow CMake Build | |
| run: (cd build; make -j 2 VERBOSE=1 install) | |
| # Can't test with GPU since have no GPU hardware on testing nodes, GPU test is build only | |
| - name: ParFlow CTest | |
| if: matrix.config.backend != 'cuda' && matrix.config.backend != 'kokkos' | |
| run: | | |
| (cd build; ctest --output-on-failure) |