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fix: disgenet takes creds as parameters instead of with prompt #8

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fix: disgenet takes creds as parameters instead of with prompt #8

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29 changes: 7 additions & 22 deletions node_data/disgenet_local.py
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Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,6 @@
import pypath.share.curl as curl
import pypath.share.session as session
import pypath.resources.urls as urls
import pypath.utils.mapping as mapping

_logger = session.Logger(name="disgenet_input")
_log = _logger._log
Expand All @@ -45,7 +44,11 @@ class DisgenetApi:
_authenticated: bool = False
_api_key: str = None

def authenticate(self) -> bool:
def __init__(self, e_mail, password):

self.authenticate(e_mail, password)

def authenticate(self, e_mail, password) -> bool:
"""
Starts an authorization process in DisGeNET API.
Returns a boolean which is success of authentication.
Expand All @@ -55,8 +58,6 @@ def authenticate(self) -> bool:
return True

print(f"Authorizing in {self._name} API...")
e_mail: str = input("E-mail: ")
password: str = getpass("Password: ")

url: str = f"{self._api_url}/auth/"
post_params: dict[str, str] = {"email": e_mail, "password": password}
Expand All @@ -78,23 +79,7 @@ def authenticate(self) -> bool:
self._authenticated = False
self._api_key = None

return self._authenticated and (self._api_key != None)

def _if_authenticated(f):
"""
Simple wrapper to get rid of the burden of
checking authentication status and authenticating
if already haven't.
"""

def wrapper(self, *args, **kwargs):
if self.authenticate():
return f(self, *args, **kwargs)

else:
print("Failure in authorization, check your credentials.")

return wrapper
assert self._authenticated and (self._api_key != None)

def _delete_cache(f):
"""
Expand Down Expand Up @@ -1972,7 +1957,7 @@ def _list_to_str(

return list_obj

@_if_authenticated
# @_if_authenticated
@_delete_cache
def _retrieve_data(
self, url: str, get_params: Union[List[str], Dict[str, str]]
Expand Down