Fetch template updates

- Include updates and fixes from (alshedivat/al-folio#2613) to (alshedivat/al-folio#2826)
- Update till commit c5d484e on Dec 3, 2024

.github/ISSUE_TEMPLATE/1_bug_report.yml

@@ -7,8 +7,8 @@ body:
       value: >
         Before you go any further. Is this really a **🐛 bug**?
 
-        If it's a question about how al-folio works, have a look at our [documentation](https://github.com/alshedivat/al-folio/blob/master/README.md),
-        [frequently asked questions](https://github.com/alshedivat/al-folio/blob/master/FAQ.md),
+        If it's a question about how al-folio works, have a look at our [documentation](https://github.com/alshedivat/al-folio/blob/main/README.md),
+        [frequently asked questions](https://github.com/alshedivat/al-folio/blob/main/FAQ.md),
         [past questions](https://github.com/alshedivat/al-folio/discussions/categories/q-a),
         or [ask a question](https://github.com/alshedivat/al-folio/discussions/new?category=q-a).
 
@@ -20,7 +20,7 @@ body:
         Please check if somebody else has already filed the same issue.
         If you find a similar issue, please add a 👍 reaction or comment on the original post.
       options:
-        - label: I read through [FAQ](https://github.com/alshedivat/al-folio/blob/master/FAQ.md) and searched through the [past issues](https://github.com/alshedivat/al-folio/issues), none of which addressed my issue.
+        - label: I read through [FAQ](https://github.com/alshedivat/al-folio/blob/main/FAQ.md) and searched through the [past issues](https://github.com/alshedivat/al-folio/issues), none of which addressed my issue.
           required: true
         - label: Yes, I have checked that this issue isn't already filed.
           required: true
@@ -81,7 +81,8 @@ body:
       description: select all environments where you have experienced this issue
       multiple: true
       options:
-        - "Running locally with Docker"
+        - "Running locally with Docker (docker compose)"
+        - "Running locally with Docker (devcontainer)"
         - "Running locally without Docker"
         - "Deployed site"
     validations:

.github/ISSUE_TEMPLATE/2_feature_request.yml

@@ -7,8 +7,8 @@ body:
       value: >
         Before you go any further, are you sure that this feature is not already implemented?
 
-        If it's a question about how al-folio works, have a look at our [documentation](https://github.com/alshedivat/al-folio/blob/master/README.md),
-        [frequently asked questions](https://github.com/alshedivat/al-folio/blob/master/FAQ.md),
+        If it's a question about how al-folio works, have a look at our [documentation](https://github.com/alshedivat/al-folio/blob/main/README.md),
+        [frequently asked questions](https://github.com/alshedivat/al-folio/blob/main/FAQ.md),
         [past questions](https://github.com/alshedivat/al-folio/discussions/categories/q-a),
         or [ask a question](https://github.com/alshedivat/al-folio/discussions/new?category=q-a).
 
@@ -20,7 +20,7 @@ body:
         Please check if somebody else has already filed the same 🚀 feature request.
         If you find a similar feature request, please add a 👍 reaction or comment on the original post.
       options:
-        - label: I read through [FAQ](https://github.com/alshedivat/al-folio/blob/master/FAQ.md) and searched through the [past issues](https://github.com/alshedivat/al-folio/issues), none of which addressed my feature request.
+        - label: I read through [FAQ](https://github.com/alshedivat/al-folio/blob/main/FAQ.md) and searched through the [past issues](https://github.com/alshedivat/al-folio/issues), none of which addressed my feature request.
           required: true
         - label: Yes, I have checked that this feature request isn't already filed.
           required: true

.github/ISSUE_TEMPLATE/config.yml

@@ -4,5 +4,5 @@ contact_links:
     url: https://github.com/alshedivat/al-folio/discussions/categories/q-a
     about: Ask and answer al-folio related questions.
   - name: 📖 Read the documentation
-    url: https://github.com/alshedivat/al-folio/blob/master/README.md
+    url: https://github.com/alshedivat/al-folio/blob/main/README.md
     about: Please consult the documentation before opening any issues!

.github/workflows/broken-links.yml

@@ -45,8 +45,8 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: Link Checker 🔗
-        uses: lycheeverse/lychee-action@v1.9.0
+        uses: lycheeverse/lychee-action@v2.1.0
         with:
           fail: true
           # removed md files that include liquid tags
-          args: --user-agent 'curl/7.54' --exclude-path README.md --exclude-path _pages/404.md --exclude-path _pages/blog.md --exclude-path _posts/2018-12-22-distill.md --exclude-path _pages/cv.md --exclude-path _news/ --exclude https://www.jpa.gov.my/ --verbose --no-progress './**/*.md' './**/*.html'
+          args: --user-agent 'curl/7.54' --exclude-path README.md --exclude-path _pages/404.md --exclude-path _pages/blog.md --exclude-path _pages/cv.md --exclude-path _posts/2018-12-22-distill.md --exclude-path _posts/2023-04-24-videos.md --verbose --no-progress './**/*.md' './**/*.html'

.github/workflows/deploy.yml

@@ -67,11 +67,16 @@ jobs:
     steps:
       - name: Checkout 🛎️
         uses: actions/checkout@v4
-      - name: Setup Ruby
+      - name: Setup Ruby 💎
         uses: ruby/setup-ruby@v1
         with:
-          ruby-version: "3.2.2"
+          ruby-version: "3.3.5"
           bundler-cache: true
+      - name: Setup Python 🐍
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.13"
+          cache: "pip" # caching pip dependencies
       - name: Update _config.yml ⚙️
         uses: fjogeleit/yaml-update-action@main
         with:
@@ -81,7 +86,7 @@ jobs:
           value: ${{ github.repository }}
       - name: Install and Build 🔧
         run: |
-          pip3 install --upgrade jupyter
+          pip3 install --upgrade nbconvert
           export JEKYLL_ENV=production
           bundle exec jekyll build
       - name: Purge unused CSS 🧹

.github/workflows/lighthouse-badger.yml

@@ -15,7 +15,6 @@ name: "Lighthouse Badger"
 # INPUTS as Secrets (env) for not manually triggered workflows
 env:
   URLS: https://alshedivat.github.io/al-folio/
-  TOKEN_NAME: ${{ secrets.LIGHTHOUSE_BADGER_TOKEN }}
   # If any of the following env is blank, a default value is used instead
   REPO_BRANCH: "${{ github.repository }} master" # target repository & branch e.g. 'dummy/mytargetrepo main'
   MOBILE_LIGHTHOUSE_PARAMS: "--only-categories=performance,accessibility,best-practices,seo --throttling.cpuSlowdownMultiplier=2"
@@ -50,7 +49,7 @@ jobs:
       - uses: actions/checkout@v4
         with:
           repository: ${{ env.REPOSITORY }}
-          token: ${{ secrets[github.event.inputs.token_name] || secrets[env.TOKEN_NAME] }}
+          token: ${{ secrets.LIGHTHOUSE_BADGER_TOKEN }}
           ref: ${{ env.BRANCH }}
       - uses: actions/checkout@v4
         with:

.github/workflows/prettier-html.yml

@@ -0,0 +1,36 @@
+name: Prettify gh-pages
+
+on:
+  workflow_dispatch:
+
+jobs:
+  format:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout gh-pages branch
+        uses: actions/checkout@v4
+        with:
+          ref: gh-pages
+
+      - name: Find and Remove </source> Tags
+        run: find . -type f -name "*.html" -exec sed -i 's/<\/source>//g' {} +
+
+      - name: Set up Node.js
+        uses: actions/setup-node@v4
+
+      - name: Install Prettier
+        run: npm install -g prettier
+
+      - name: Check for Prettier
+        run: npx prettier --version || echo "Prettier not found"
+
+      - name: Run Prettier on HTML files
+        run: npx prettier --write '**/*.html'
+
+      - name: Commit and push changes
+        run: |
+          git config user.name "github-actions"
+          git config user.email "actions@github.com"
+          git add .
+          git commit -m "Formatted HTML files" || echo "No changes to commit"
+          git push

.github/workflows/schedule-posts.yml

@@ -0,0 +1,39 @@
+name: Publish posts scheduled for today
+
+on:
+  schedule:
+    # Run every day at 23:30 UTC or manually run
+    - cron: "30 23 * * *"
+  workflow_dispatch:
+
+jobs:
+  publish_scheduled:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout main branch
+        uses: actions/checkout@v4
+        with:
+          ref: main
+
+      - name: Get the date for today
+        id: date
+        run: echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
+
+      - name: Check for scheduled posts and move to posts
+        run: |
+          echo "Today is $TODAY"
+          shopt -s nullglob
+          for file in _scheduled/${TODAY}-*.md; do
+            echo "Found scheduled: $file"
+            mv "$file" "_posts/"
+            echo "Moved $file to _posts/"
+          done
+
+      - name: Commit and push changes
+        run: |
+          git config user.name "github-actions"
+          git config user.email "actions@github.com"
+          git add _posts/
+          git add _scheduled/
+          git commit -m "Posted Scheduled Drafts on $TODAY" || echo "No changes to commit"
+          git push

.lycheeignore

@@ -0,0 +1,3 @@
+linkedin.com
+reddit.com
+jpa.gov.my

.prettierignore

@@ -9,3 +9,4 @@ assets/plotly/demo.html
 lighthouse_results/**
 _posts/2015-10-20-math.md
 _sass/font-awesome/*.scss
+_sass/tabler-icons/*.scss

CUSTOMIZE.md

@@ -92,7 +92,7 @@ scholar:
   first_name: [Albert, A.]
 ```
 
-If the entry matches one form of the last names and the first names, it will be underlined. Keep meta-information about your co-authors in [\_data/coauthors.yml](_data/coauthors.yml) and Jekyll will insert links to their webpages automatically. The co-author data format is as follows,
+If the entry matches one form of the last names and the first names, it will be underlined. Keep meta-information about your co-authors in [\_data/coauthors.yml](_data/coauthors.yml) and Jekyll will insert links to their webpages automatically. The co-author data format is as follows, with the last names lower cased and without accents as the key:
 
 ```yaml
 "adams":
@@ -115,7 +115,7 @@ If the entry matches one form of the last names and the first names, it will be
     url: https://en.wikipedia.org/wiki/Carl_Philipp_Emanuel_Bach
 ```
 
-If the entry matches one of the combinations of the last names and the first names, it will be highlighted and linked to the url provided.
+If the entry matches one of the combinations of the last names and the first names, it will be highlighted and linked to the url provided. Note that the keys **MUST BE** lower cased and **MUST NOT** contain accents. This is because the keys are used to match the last names in the BibTeX entries, considering possible variations.
 
 ### Buttons (through custom bibtex keywords)
 
@@ -169,3 +169,31 @@ Due to the necessary permissions (PAT and others mentioned above), it is recomme
 ## Customizing fonts, spacing, and more
 
 You can customize the fonts, spacing, and more by editing [\_sass/\_base.scss](_sass/_base.scss). The easiest way to try in advance the changes is by using [chrome dev tools](https://developer.chrome.com/docs/devtools/css) or [firefox dev tools](https://firefox-source-docs.mozilla.org/devtools-user/). In there you can click in the element and find all the attributes that are set for that element and where are they. For more information on how to use this, check [chrome](https://developer.chrome.com/docs/devtools/css) and [firefox](https://firefox-source-docs.mozilla.org/devtools-user/page_inspector/how_to/examine_and_edit_css/index.html) how-tos, and [this tutorial](https://www.youtube.com/watch?v=l0sgiwJyEu4).
+
+## Scheduled Posts
+
+`al-folio` contains a workflow which automatically publishes all posts scheduled at a specific day, at the end of the day (23:30). By default the action is disabled, and to enable it you need to go to `.github/workflows/` and find the file called `schedule-posts.txt`. This is the workflow file. For GitHub to recognize it as one (or to enable the action), you need to rename it to `schedule-posts.yml`.
+
+In order to use this you need to save all of your "Completed" blog posts which are scheduled to be uploaded on a specific date, in a folder named `_scheduled/` in the root directory.
+
+> Incomplete posts should be saved in `_drafts/`
+
+### Name Format
+
+In this folder you need to store your file in the same format as you would in `_posts/`
+
+> Example file name: `2024-08-26-This file will be uploaded on 26 August.md`
+
+### Important Notes
+
+- The scheduler uploads posts everyday at 🕛 23:30 UTC
+- It will only upload posts at 23:30 UTC of their respective scheduled days, It's not uploaded in 23:59 in case there are a lot of files as the scheduler must finish before 00:00
+- It will only upload files which follow the pattern `yyyy-mm-dd-title.md`
+  - This means that only markdown files will be posted
+  - It means that any markdown which do not follow this pattern will not be posted
+- The scheduler works by moving posts from the `_scheduled/` directory to `_posts/`, it will not post to folders like `_projects/` or `_news/`
+- The date in the name of the file is the day that file will be uploaded on
+  - `2024-08-27-file1.md` will not be posted before or after 27-August-2024 (Scheduler only works for posts scheduled on the present day)
+  - `2025-08-27-file2.md` will be posted exactly on 27-August-2025
+  - `File3.md` will not be posted at all
+  - `2026-02-31-file4.md` is supposed to be posted on 31-February-2026, but there is no 31st in February hence this file will never be posted either

Dockerfile

@@ -1,41 +1,75 @@
 FROM ruby:latest
+
+# uncomment these if you are having this issue with the build:
+# /usr/local/bundle/gems/jekyll-4.3.4/lib/jekyll/site.rb:509:in `initialize': Permission denied @ rb_sysopen - /srv/jekyll/.jekyll-cache/.gitignore (Errno::EACCES)
+# ARG GROUPID=901
+# ARG GROUPNAME=ruby
+# ARG USERID=901
+# ARG USERNAME=jekyll
+
 ENV DEBIAN_FRONTEND noninteractive
 
-Label MAINTAINER Amir Pourmand
+LABEL authors="Amir Pourmand,George Araújo" \
+      description="Docker image for al-folio academic template" \
+      maintainer="Amir Pourmand"
 
-RUN apt-get update -y && apt-get install -y --no-install-recommends \
-    locales \
-    imagemagick \
-    build-essential \
-    zlib1g-dev \
-    jupyter-nbconvert \
-    inotify-tools procps && \
-    apt-get clean && rm -rf /var/lib/apt/lists/* /var/cache/apt/archives/*
+# uncomment these if you are having this issue with the build:
+# /usr/local/bundle/gems/jekyll-4.3.4/lib/jekyll/site.rb:509:in `initialize': Permission denied @ rb_sysopen - /srv/jekyll/.jekyll-cache/.gitignore (Errno::EACCES)
+# add a non-root user to the image with a specific group and user id to avoid permission issues
+# RUN groupadd -r $GROUPNAME -g $GROUPID && \
+#     useradd -u $USERID -m -g $GROUPNAME $USERNAME
 
+# install system dependencies
+RUN apt-get update -y && \
+    apt-get install -y --no-install-recommends \
+        build-essential \
+        curl \
+        imagemagick \
+        inotify-tools \
+        locales \
+        nodejs \
+        procps \
+        python3-pip \
+        zlib1g-dev && \
+    pip --no-cache-dir install --upgrade --break-system-packages nbconvert
 
+# clean up
+RUN apt-get clean && \
+    apt-get autoremove && \
+    rm -rf /var/lib/apt/lists/* /var/cache/apt/archives/*  /tmp/*
+
+# set the locale
 RUN sed -i '/en_US.UTF-8/s/^# //g' /etc/locale.gen && \
     locale-gen
 
-
-ENV LANG=en_US.UTF-8 \
+# set environment variables
+ENV EXECJS_RUNTIME=Node \
+    JEKYLL_ENV=production \
+    LANG=en_US.UTF-8 \
     LANGUAGE=en_US:en \
-    LC_ALL=en_US.UTF-8 \
-    JEKYLL_ENV=production
+    LC_ALL=en_US.UTF-8
 
+# create a directory for the jekyll site
 RUN mkdir /srv/jekyll
 
+# copy the Gemfile and Gemfile.lock to the image
 ADD Gemfile.lock /srv/jekyll
 ADD Gemfile /srv/jekyll
 
+# set the working directory
 WORKDIR /srv/jekyll
 
 # install jekyll and dependencies
-RUN gem install jekyll bundler
-
+RUN gem install --no-document jekyll bundler
 RUN bundle install --no-cache
-# && rm -rf /var/lib/gems/3.1.0/cache
+
 EXPOSE 8080
 
 COPY bin/entry_point.sh /tmp/entry_point.sh
 
+# uncomment this if you are having this issue with the build:
+# /usr/local/bundle/gems/jekyll-4.3.4/lib/jekyll/site.rb:509:in `initialize': Permission denied @ rb_sysopen - /srv/jekyll/.jekyll-cache/.gitignore (Errno::EACCES)
+# set the ownership of the jekyll site directory to the non-root user
+# USER $USERNAME
+
 CMD ["/tmp/entry_point.sh"]