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The default for pretrained_model_path in config files is a personal directory #61

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leannmlindsey opened this issue Mar 29, 2024 · 0 comments

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@leannmlindsey
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I noticed when trying to repeat the genomic benchmark experiments that your default model path in all of your config files is a checkpoint within a personal directory

For example: Line 92 in hyena-dna/configs/experiment/hg38
/genomic_benchmark.yaml

pretrained_model_path: /local-scratch/nigam/projects/mwornow/projects/safari-internal/outputs/2023-04-14/2_128_1024.ckpt

I would like to use a pretrained model, but this parameter does not seem to accept the huggingface model, or a downloaded directory of the huggingface model (I tried both). It is looking for a file ending in .ckpt not a directory.

Can you provide us with the appropriate pre-trained checkpoint files?

Or provide instructions on how to obtain them from the model files on huggingface?

Thank you,
LeAnn

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