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29 Open 37 Closed
29 Open 37 Closed
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Issues list

For the dataset GenomicBenchmarks
#80 opened Nov 15, 2024 by Eyulaochen
1
Pretrain hyenadna with more format support
#78 opened Sep 28, 2024 by HelloWorldLTY
1
Performance question regarding next token prediction task
#77 opened Sep 23, 2024 by HeMuling
1
not compatible with H100
#76 opened Sep 17, 2024 by takakoyama
1
RuntimeError: cuFFT error: CUFFT_INTERNAL_ERROR
#75 opened Aug 7, 2024 by ani11452
1
CUDA out of memory occurs when the training length reaches 450k on a100
#73 opened Jul 9, 2024 by luoshengtangxiademao
1
install problem
#72 opened Jun 30, 2024 by agryji08
Inquire about GWAS tasks
#70 opened Jun 4, 2024 by 1633347510
Questions about pre-training with multiple sequences
#69 opened May 24, 2024 by HelloWorldLTY
1
Error when Resuming pre-training
#67 opened May 3, 2024 by richardsun-voyager
Symbol lookup error
#66 opened Apr 25, 2024 by buwanim
Failure to reproduce the hyenaDNA reported results on NT tasks. HURRY! HURRY HURRY
#65 opened Apr 16, 2024 by multydoffer
How can I access the dataset--genomic_benchmark I got timeout issue
#64 opened Apr 12, 2024 by qijishinidie
Question: How to generate DNA sequence or sequence embeddings based on own bed file
#63 opened Mar 31, 2024 by HelloWorldLTY
Bugs when I try to access the embeddings
#62 opened Mar 30, 2024 by HelloWorldLTY
3
The default for pretrained_model_path in config files is a personal directory
#61 opened Mar 29, 2024 by leannmlindsey
Running with standard Huggingface config and trainer files does not give optimal results
#60 opened Mar 29, 2024 by leannmlindsey
Reproducing the HyenaDNA results on NT Benchmarks
#59 opened Mar 25, 2024 by leannmlindsey
need to swap layer norm op for triton-based layer norm?
#57 opened Mar 22, 2024 by ankitvgupta
2
2
How to pre-train on custom dataset using hyena-dna
#56 opened Mar 15, 2024 by OswaldoBornemann
How to convert the batch cell from the GenomicBenchmarks data to user data? CUDA memory overload if running "Single example" cell multiple times to produce embeddings.
#55 opened Mar 14, 2024 by Ontos46
How to recreate the result of DNABERT in paper
#53 opened Mar 4, 2024 by jimmylihui
1
Predicting probability vectors of equal length to input sequence
#52 opened Feb 23, 2024 by CherWeiYuan
The tokenizer's bug in Huggingface
#50 opened Feb 13, 2024 by Horikitasaku
1
How to define which dataset to use in command?
#49 opened Feb 11, 2024 by jimmylihui
ProTip! no:milestone will show everything without a milestone.