TRF Gene Tandem Repear Search Program

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Table of Contents

• Repository Introduction
• Prerequisites
• Image Specifications
• Getting Help
• How to Contribute

Repository Introduction

Tandem Repeats Finder is a program designed to locate and display tandem repeats within DNA sequences. Using this program, users can input a DNA sequence in FASTA format without the need to specify patterns, pattern sizes, or any other parameters, and obtain information about the repeats in the DNA sequence, including their positions, sizes, copy numbers, and nucleotide content.

Core Features:

1. Automatically detects tandem repeats in DNA sequences without requiring any pre-specified parameters.
2. Provides detailed output on repeat location, size, copy number, and sequence alignment.
3. Processes sequences of any length rapidly, supporting pattern sizes from 1 to 2000 bases.

This project offers pre-configured TRF Gene Tandem Repear Search Program images with Flink and its runtime environment pre-installed, along with deployment templates. Follow the guide to enjoy an "out-of-the-box" experience.

System Requirements:

• CPU: 2GHz or higher
• RAM: 8GB or more
• Disk: At least 40GB

Prerequisites

Register a Huawei account and activate Huawei Cloud

Image Specifications

Image Version	Description	Notes
TRF-4.09.1-kunpeng	Deployed on Kunpeng servers with Huawei Cloud EulerOS 2.0 64bit

Getting Help

• Submit an issue
• Contact Huawei Cloud Marketplace product support

How to Contribute

• Fork this repository and submit a merge request.
• Update README.md synchronously based on your open-source mirror information.