v2.2

New step:

• create_summarizedExperiment, which creates an R object containing all tables and annotations inspired by R package tximeta (see help)

Minor changes:

• reorganized output folder (see help)
• updated readme
• added workflow schematic
• added new dependencies in conda env (R packages)
• added new parameters used for annotating the SummarizedExperiment object

v2.1

• update software versions
• fix containers and conda installation

version 2.0

• single pass and 2pass modes
• conda env and dockerfile
• automated circleCI tests
• count and FPKM matrices (for genes and transcript) computations
• input_file mode and different read length handling
• better output folder structure

Version 1.0

Initial release