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130 Open 418 Closed
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Issues list

visualize.parameters produces error when working with hdf5-stored result.problem.x_scales
#1535 opened Dec 4, 2024 by C-Peiter
OptimizationResultHDF5Writer should allow writing individual OptimzerResults enhancement New feature or request
#1527 opened Nov 27, 2024 by dweindl
@dweindl
OptimizationResultHDF5Writer should accept OptimizeResult
#1526 opened Nov 27, 2024 by dweindl
@dweindl
Optimizers aren't setting OptimizerResult.optimizer optimization Related to optimization process
#1524 opened Nov 27, 2024 by dweindl
@dweindl
test_deepcopy_objective fails CI
#1520 opened Nov 26, 2024 by dweindl
@dweindl
Select: add store/load to notebook; replace visualization code with PEtab Select implementations enhancement New feature or request
#1513 opened Nov 19, 2024 by dilpath
@dilpath
Improve exception-handling in SacessOptimizer optimization Related to optimization process
#1512 opened Nov 19, 2024 by dweindl
@dweindl
test_correct_startpoint_usage[34-nlopt] fails
#1511 opened Nov 18, 2024 by dweindl
@dweindl
2
Add test problems to package documentation
#1507 opened Nov 14, 2024 by dweindl
DeprecationWarning for old method PetabImporter.create_model(). fixed but not released
#1501 opened Oct 30, 2024 by vwiela
@PaulJonasJost
Store timestamp in pypesto.result.optimize.OptimizerResult enhancement New feature or request optimization Related to optimization process
#1500 opened Oct 24, 2024 by dweindl
More memory-efficient multi-start optimization optimization Related to optimization process performance
#1499 opened Oct 24, 2024 by dweindl
Test for gradient check asserts that gradients are wrong
#1495 opened Oct 20, 2024 by m-philipps
Conditional variable initialisation in AmiciObjective.check_gradients_match_finite_differences bug Something isn't working
#1494 opened Oct 20, 2024 by m-philipps
@m-philipps
3
DlibOptimizer -- don't hardcode solver_epsilon optimization Related to optimization process
#1492 opened Oct 17, 2024 by dweindl
@PaulJonasJost
1
SacessOptimizer - support for recording full history enhancement New feature or request optimization Related to optimization process
#1488 opened Oct 16, 2024 by dweindl
Support sensi_orders in gradient checks bug Something isn't working
#1487 opened Oct 13, 2024 by dilpath
1
Add gradient check methods to notebooks documentation enhancement New feature or request
#1481 opened Oct 4, 2024 by dilpath
Reduce computation and non-deterministic behaviour in evidence and sampling tests fixed but not released
#1475 opened Sep 30, 2024 by dilpath
Potential Bug in Visualization in case of only inadmissable values question Further information is requested
#1471 opened Sep 19, 2024 by PaulJonasJost
1
PetabImporter.create_edatas creates incomplete edata objects. AMICI PEtab
#1466 opened Sep 16, 2024 by FFroehlich
2
petab.create_objective with custom edatas is broken
#1463 opened Sep 16, 2024 by FFroehlich
Move some things out of the Main Package question Further information is requested
#1452 opened Sep 4, 2024 by PaulJonasJost
@PaulJonasJost
3
Publication using pyPESTO: Multimodal Parameter Inference for a Canonical Motor Microcircuit Controlling Rat Hindlimb Motion Citation Issue to add Citation using pyPESTO to the bib
#1450 opened Aug 30, 2024 by FFroehlich
1
@dweindl
2
How to set fill_fixed_parameters=True for petab parameter mappings?
#1448 opened Aug 15, 2024 by FFroehlich
4
ProTip! Exclude everything labeled bug with -label:bug.