new script: add_s3_alt_store_to_bfoptions.py #1
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This script was only used for updating existing mkngff data on idr-testing. But in future we will add the alt_store to bfoptions when it gets created. See IDR/omero-mkngff#17 |
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See ome/ZarrReader#82
and IDR/omero-mkngff#15
This script outputs the s3 URL and fileset template path (for path to bfoptions) for each NGFF fileset in the form of a csv file (one csv per study).
The script also includes command-line instructions for parsing the csv file to append
omezarr.alt_storeto each.bfoptionsfile...