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@IKIM-Essen

Institute for AI in Medicine (IKIM)

Institute for AI in Medicine (IKIM); University of Duisburg-Essen

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  1. uncovar uncovar Public

    Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

    Python 22 8

  2. RiboSnake RiboSnake Public

    16S pipeline using qiime2 created with snakemake

    Python 11 1

  3. sars-cov-2-workflow-comparison sars-cov-2-workflow-comparison Public

    A collection of workflows for analyzing the SARS-CoV-2 genome.

    8 13

  4. master-project-seminar master-project-seminar Public

    DataScience in Bioinformatics WiSe 2022/23

    6 2

  5. ClusterDocs ClusterDocs Public

    5 8

  6. tech-talks tech-talks Public

    Discussion of patterns for using the IKIM machines

    Shell 3

Repositories

Showing 10 of 22 repositories
  • ikim-website Public

    ikim-website

    IKIM-Essen/ikim-website’s past year of commit activity
    TeX 0 MIT 3 0 0 Updated Jan 23, 2025
  • RiboSnake Public

    16S pipeline using qiime2 created with snakemake

    IKIM-Essen/RiboSnake’s past year of commit activity
    Python 11 MIT 1 6 2 Updated Jan 22, 2025
  • uncovar Public

    Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

    IKIM-Essen/uncovar’s past year of commit activity
    Python 22 BSD-2-Clause 8 46 14 Updated Jan 21, 2025
  • ERMA Public

    ERMA - epicPCR Resistome-Microbiome Analyzer

    IKIM-Essen/ERMA’s past year of commit activity
    Python 0 0 0 1 Updated Jan 20, 2025
  • HyDRA Public
    IKIM-Essen/HyDRA’s past year of commit activity
    Python 1 0 0 0 Updated Jan 16, 2025
  • EUCAST_MIC_Extractor Public

    Python Project that extracts the MIC values from the EUXAST xlsx files.

    IKIM-Essen/EUCAST_MIC_Extractor’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 9, 2025
  • metagenomics_res Public
    IKIM-Essen/metagenomics_res’s past year of commit activity
    Python 1 BSD-2-Clause 0 4 1 Updated Jan 7, 2025
  • Microbiome_TimeSeries Public

    Machine learning models for time series prediction of microbial abundance

    IKIM-Essen/Microbiome_TimeSeries’s past year of commit activity
    Python 0 0 0 1 Updated Dec 12, 2024
  • EMCP-slurm Public
    IKIM-Essen/EMCP-slurm’s past year of commit activity
    Shell 0 BSD-2-Clause 0 0 1 Updated Dec 9, 2024
  • EMCP-config Public

    IaC configuration of the Essen Medical Computing Platform (EMCP)

    IKIM-Essen/EMCP-config’s past year of commit activity
    Jinja 0 BSD-2-Clause 4 4 (1 issue needs help) 4 Updated Dec 9, 2024
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