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workflow/scripts/collect-lineage-variants.py

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@@ -324,7 +324,6 @@ def write_record(pos, ref_allele, alt_allele, lineages, variants):
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known_non_synonymous_variants, VariantType.Subst, merge=False
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):
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pos = variant.genome_pos()
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ref_allele = infasta.fetch(reference=contig, start=pos, end=pos + 3)
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for alt_allele in aa_to_dna(variant.right):
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