ansible install question - seems to be failing on last glassfish4 step #9

jmjamison · 2017-11-01T23:47:16Z

I've been able to use the vagrant install with no trouble. But running the ansible script I do get a fatal error on the last glassfish step.

fatal: [dataverse]: FAILED! => {"changed": true, "cmd": "unzip -d /tmp /tmp/glassfish-4.1.zip", "delta": "0:00:00.109161", "end": "2017-10-31 23:23:59.418016", "failed": true, "rc": 1, "start": "2017-10-31 23:23:59.308855", "stderr": "replace /tmp/glassfish4/bin/asadmin? [y]es, [n]o, [A]ll, [N]one, [r]ename: NULL\n(EOF or read error, treating as "[N]one" ...)", "stdout": "Archive: /tmp/glassfish-4.1.zip\n creating: /tmp/glassfish4/.org.opensolaris,pkg/download/\n creating: /tmp/glassfish4/.org.opensolaris,pkg/file/", "stdout_lines": ["Archive: /tmp/glassfish-4.1.zip", " creating: /tmp/glassfish4/.org.opensolaris,pkg/download/", " creating: /tmp/glassfish4/.org.opensolaris,pkg/file/"], "warnings": ["Consider using unarchive module rather than running unzip"]}

I can log in and check all the services in the readme document but am unable to log into the dataverse app (as I did with the vagrant install on my laptop).

Thanks,
Jamie Jamison
UCLA Social Science Data Archive
jamison@library.ucla.edu

pdurbin · 2017-11-01T23:58:34Z

I'm glad to hear the vagrant install works, at least. 😄

I added a note to myself to ping @donsizemore in IRC tomorrow. Maybe @pameyer too.

donsizemore · 2017-11-02T00:13:15Z

it'll be an ansible version thing - which is why it works in the vagrant box but not in a bare OS. probably time to update the vagrant image and deal with whatever breaks.

pdurbin · 2017-11-02T00:21:35Z

Oh, I forgot that this repo has a Vagrantfile too. I assumed @jmjamison was talking about the Vagrantfile from the main Dataverse repo.

@jmjamison while this gets sorted out, if you're interested, I'm looking for people to try out NDS Labs Workbench and leave comments with how it went at IQSS/dataverse#4152 😄

jmjamison · 2017-11-02T00:41:21Z

Both vagrant and ansible are on the same repo. And I'll try out IQSS/dataverse#4152.

donsizemore · 2017-11-02T12:17:37Z

@jmjamison Just out of curiosity, what version of Ansible are you using? EPEL 7 has bumped to 2.4.0, Ubuntu 16.04 provides 2.0.0. Just trying to gauge which deprecated modules to ignore ;->

donsizemore · 2017-11-02T13:41:27Z

Hmmm. works for me using EPEL-provided ansible-2.4.0

jmjamison · 2017-11-03T18:19:07Z

I'm using ansible 2.2.1.0 on Ubuntu. Maybe I should update ansible.

jmjamison · 2017-11-03T21:16:35Z

I've update ansible to: ansible 2.4.1.0. I tried to rerunning the install and got this error:
fatal: [dataverse]: FAILED! => {"changed": true, "cmd": "unzip -d /tmp /tmp/glassfish-4.1.zip", "delta": "0:00:00.103068", "end": "2017-11-03 20:59:00.779011", "failed": true, "msg": "non-zero return code", "rc": 1, "start": "2017-11-03 20:59:00.675943", "stderr": "replace /tmp/glassfish4/bin/asadmin? [y]es, [n]o, [A]ll, [N]one, [r]ename: NULL\n(EOF or read error, treating as "[N]one" ...)", "stderr_lines": ["replace /tmp/glassfish4/bin/asadmin? [y]es, [n]o, [A]ll, [N]one, [r]ename: NULL", "(EOF or read error, treating as "[N]one" ...)"], "stdout": "Archive: /tmp/glassfish-4.1.zip\n creating: /tmp/glassfish4/.org.opensolaris,pkg/download/\n creating: /tmp/glassfish4/.org.opensolaris,pkg/file/", "stdout_lines": ["Archive: /tmp/glassfish-4.1.zip", " creating: /tmp/glassfish4/.org.opensolaris,pkg/download/", " creating: /tmp/glassfish4/.org.opensolaris,pkg/file/"]}

I'll go over this and see if I can figure out the new error.

jmjamison · 2017-11-03T21:20:27Z

The task it seems to be failing at is: < TASK [dataverse : unzip glassfish] >

I also get a warning before the fatal message:
[WARNING]: Consider using unarchive module rather than running unzip

pameyer · 2017-11-03T21:26:35Z

@jmjamison it's looking to me like there's been a previous unzip of the zip file in the tmp directory, the ansible task isn't checking to see if the directory has been created before running, and it's failing waiting on input that never comes for the question of overwriting or not.

So possibly adding -o to the current unzip -d /tmp ... would help; or removing any /tmp/glassfish* directories.

jmjamison · 2017-11-03T21:43:46Z

I removed the /tmp/glassfish directories and tried again. It almost worked but found another instance of GlassFIsh server so I hand't cleaned up everything. Will do so and try again though I think updating my version of ansible was all that was needed.

jmjamison · 2017-11-03T23:38:31Z

I'm running into a problem with port 4848. I've tried changing that in the domain.xml file which didn't work. Next I'm going to see if I can change that in AWS and install again.

tcp6 0 0 :::4848 :::* LISTEN -

jmjamison · 2017-11-04T00:47:21Z

On a fresh aws instance I'm still failing at Glassfish:
fatal: [dataverse]: FAILED! => {"changed": true, "cmd": "nohup /usr/local/glassfish4/bin/asadmin deploy /tmp/dvinstall/dataverse.war", "delta": "0:02:26.683220", "end": "2017-11-04 00:46:19.298230", "failed": true, "msg": "non-zero return code", "rc": 1, "start": "2017-11-04 00:43:52.615010", "stderr": "Remote server does not listen for requests on [localhost:4848]. Is the server up?\nUnable to get remote commands. \nClosest matching local command(s): \n help", "stderr_lines": ["Remote server does not listen for requests on [localhost:4848]. Is the server up?", "Unable to get remote commands. ", "Closest matching local command(s): ", " help"], "stdout": "Command deploy failed.", "stdout_lines": ["Command deploy failed."]}

pdurbin · 2017-11-04T01:35:48Z

Is the server up?

If it helps, the way the Dataverse installer checks if Glassfish is up or not is with asadmin list-domains: https://github.com/IQSS/dataverse/blob/v4.8.1/scripts/installer/install#L1057

@jmjamison I'm wondering if Ansible is a hard requirement for you. I'm all for reproducible, but as a first cut maybe you could go through the vanilla non-Ansible process described in the Installation Guide at http://guides.dataverse.org

Just a thought. I'm also wondering if you got a chance to try our that NDS Labs Workbench. 😄

jmjamison · 2017-11-07T00:07:08Z

Actually we do need a script-able install. Sorry but I haven't gotten to far yet with NDS labs workbench.

pdurbin · 2017-11-07T00:45:13Z

@jmjamison that's cool. There's a non-interactive mode described at http://guides.dataverse.org/en/4.8/installation/installation-main.html if that's of interest.

jmjamison · 2017-11-08T21:20:34Z

Progress - a new error! Got past Glassfish problems. From reading posts it seems that I needed to ad my hostname to the /etc/hosts file. That worked. Then I got:
fatal: [dataverse]: FAILED! => {"changed": true, "cmd": "unzip -d /tmp /tmp/dvinstall.zip", "delta": "0:00:00.021204", "end": "2017-11-08 21:14:58.360153", "failed": true, "msg": "non-zero return code", "rc": 1, "start": "2017-11-08 21:14:58.338949", "stderr": "replace /tmp/dvinstall/data/dv-uma-sub2.json? [y]es, [n]o, [A]ll, [N]one, [r]ename: NULL\n(EOF or read error, treating as "[N]one" ...)", "stderr_lines": ["replace /tmp/dvinstall/data/dv-uma-sub2.json? [y]es, [n]o, [A]ll, [N]one, [r]ename: NULL", "(EOF or read error, treating as "[N]one" ...)"], "stdout": "Archive: /tmp/dvinstall.zip", "stdout_lines": ["Archive: /tmp/dvinstall.zip"]}

donsizemore · 2017-11-08T21:28:12Z

@jmjamison the ansible dataverse role isn't idempotent as ansible aims to be, mostly because the glassfish / dataverse installation process is entirely different from subsequent upgrades. are you wiping out /usr/local/glassfish4 or its equivalent in between runs? the role pretty much expects a clean OS.

jmjamison · 2017-11-08T23:07:19Z

Yes, I have a small cleanup list between runs.

…

On Wed, Nov 8, 2017 at 1:28 PM, Don Sizemore ***@***.***> wrote: @jmjamison <https://github.com/jmjamison> the ansible dataverse role isn't idempotent as ansible aims to be, mostly because the glassfish / dataverse installation process is entirely different from subsequent upgrades. are you wiping out /usr/local/glassfish4 or its equivalent in between runs? the role pretty much expects a clean OS. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#9 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAOBOZBb-NcuiqER2l_D5lLAvrbuTXCBks5s0hztgaJpZM4QO-tu> .

-- UCLA Library Data Archive jamison@library.ucla.edu 310-825-0716

----------------------------------------------------------------------------- "An asset is only an asset if you can access it ..." AMIA (Association of Moving Image Archivists)/Digital Asset Symposium 2008

jmjamison · 2017-11-09T20:54:45Z

Given the problems I'm going to try to install directly on the server (localhost) rather than ssh. Has anyone been able to get the script to run successfully that way?

pdurbin · 2017-11-09T21:00:09Z

Given the problems I'm going to try to install directly on the server (localhost) rather than ssh.

I'm not sure what you mean by "rather than ssh". It's quite common to ssh into a server and run the Dataverse installer. Are you talking about ssh vs. attaching directly to a physical console (KVM?) It shouldn't matter.

jmjamison · 2017-11-13T23:22:09Z

This is the task where I'm having the problem.
First this:
/ TASK [dataverse : install glassfish upstart script for
\ Debian/Ubuntu] /

    \   ^__^
     \  (oo)\_______
        (__)\       )\/\
            ||----w |
            ||     ||

name: install glassfish upstart script for Debian/Ubuntu
template: src=glassfish.conf.j2 dest=/etc/init
owner=root group=root mode=0644
when: ansible_os_family == "Debian"
tags: glassfish

skipping: [dataverse] => {"changed": false, "skip_reason": "Conditional result was False", "skipped": true}

I presume it is false in that I'm installing on RedHat, then
/ TASK [dataverse : install glassfish upstart script for
\ Debian/Ubuntu] /

    \   ^__^
     \  (oo)\_______
        (__)\       )\/\
            ||----w |
            ||     ||

skipping: [dataverse] => {"changed": false, "skip_reason": "Conditional result was False", "skipped": true}
which runs:
name: start glassfish with asadmin so subsequent Ansible-initiated restarts succeed on RedHat/CentOS
become: yes
become_user: "{{ dataverse.glassfish.user }}"
shell: "nohup {{ dataverse.glassfish.root }}/bin/asadmin start-domain"
when: ansible_os_family == "RedHat" and
ansible_distribution_major_version == "7"
tags: glassfish

and gives this ubiquitous error:
name: start glassfish with asadmin so subsequent Ansible-initiated restarts succeed on RedHat/CentOS
become: yes
become_user: "{{ dataverse.glassfish.user }}"
shell: "nohup {{ dataverse.glassfish.root }}/bin/asadmin start-domain"
when: ansible_os_family == "RedHat" and
ansible_distribution_major_version == "7"
tags: glassfish

Thats the part I'm still trying to research.

pdurbin · 2017-11-14T01:46:18Z

@donsizemore what's with all the cowsay? 😄

jmjamison · 2017-11-14T01:56:53Z

Sorry, I need to output more before posting.

pdurbin · 2017-11-14T02:02:43Z

@jmjamison it's all good. Did you see my comment the other day about how the Dataverse installer has a non-interactive mode? @pameyer developed it and I asked him about it. My understanding it that he mostly uses Ansible (his own code, not this repo) to install prerequisites like Postgres and such.

I'm not sure if this comment is helpful or not. In Vagrant I do all my setup with shell scripts ( https://github.com/IQSS/dataverse/tree/v4.8.2/scripts/vagrant ). I haven't really gotten into Ansible yet (but I did use Puppet back in the day).

pdurbin · 2017-11-14T15:18:19Z

@jmjamison I was just chatting a bit with @donsizemore at http://irclog.iq.harvard.edu/dataverse/2017-11-14#i_60164 (you're welcome to join us at http://chat.dataverse.org !) and I think the fundamental problem might be Ubuntu. Would you be able to try on CentOS? As a project, Dataverse has committed resources getting Dataverse to run on RHEL/CentOS but not Debian/Ubuntu (please see IQSS/dataverse#1059 ). @donsizemore is a member of the community and has made a valiant attempt to support Ubuntu in this Ansible playbook but as he said in IRC just now (see link above), "i never coded it for Ubuntu/Debian. the Readme.md says CentOS 7 and means it".

I will say that there are people out in the community running Dataverse on Ubuntu, perhaps in production. The best way to get in touch with them is to ask at https://groups.google.com/forum/#!forum/dataverse-community . I hope this helps and that it's not too much of a downer that Dataverse supports RHEL/CentOS rather than supporting both RHEL/CentOS and Ubuntu. We had to pick one due to limited resources. 😞

jmjamison · 2017-11-14T23:03:41Z

I tried out Ubuntu to see if there was a difference. Mostly I've been trying this on RHEL 7 but I will try CentOS.

pdurbin · 2017-11-14T23:40:02Z

@jmjamison oh! You started with RHEL and it didn't work and then you tried Ubuntu? I'm surprised it didn't work on RHEL.

jmjamison · 2017-11-14T23:49:04Z

Worked ok on Vagrant but not Ansible. Problem with Glassfish. I still think it might be something I'm doing.

pdurbin · 2017-11-15T01:12:19Z

@jmjamison do you think doing a standard install will help you better understand and troubleshoot the Ansible scripts? I'm sure @donsizemore would welcome a pull request if you figure out a solution.

pameyer · 2018-05-24T00:21:02Z

When the script was paused, could you get a response at 8080 with the default "welcome to glassfish message"?

jmjamison · 2018-05-24T00:28:50Z

So far I'd only tried 1 minute and will try 180 next.

Haven't checked for the default welcome. I have to pack up but will try both tomorrow.

jmjamison · 2018-05-24T19:38:09Z

I've tried up to 5 minutes and it is still failing the same way.

pdurbin · 2018-05-24T19:51:58Z

Bah! Any ideas, @donsizemore or @danschmidt5189 ?

pdurbin · 2018-06-05T11:46:42Z

@jmjamison we're having trouble reproducing this but we've been talking about it in IRC the last couple days.

pdurbin · 2018-06-08T18:38:53Z

@jmjamison hi, just a heads up that dataverse-ansible now installs Dataverse 4.9 if you want to give it another try. Also, you're welcome to join me, @donsizemore and @pameyer at http://chat.dataverse.org some day if you're still having trouble. We're all on Eastern time.

jmjamison · 2018-07-19T20:42:53Z

It finally ran to completion once. One issue I have run into is that Glassfish by default looks in the applications folder for the war file. So in the dataverse-install.yml file I added a line to copy the war file over to the glassfish applications directory. Given my inexperience with Glassfish I didn't want to start changing it's configuration.

So far I'm back to different Glassfish problems. It may be that I'm not getting everything cleaned out correctly between playbook runs.

jmjamison · 2018-07-19T23:28:07Z

Also, ran into an odd problem today: http://guides.dataverse.org/en/latest/_static/installation/files/issues/2180/grizzly-patch/glassfish-grizzly-extra-all.jar does not seem to be reachable. I need to see if it is our connection that's causing this.

pdurbin · 2018-07-20T00:09:46Z

http://guides.dataverse.org/en/latest/_static/installation/files/issues/2180/grizzly-patch/glassfish-grizzly-extra-all.jar does not seem to be reachable.

This is due to https://rce-docs.hmdc.harvard.edu/event/rce-and-all-other-hmdc-servers-down-due-planned-building-power-outage and it should be back up in 24 hours or so.

Not sure what to say about between runs. Sounds like progress!

jmjamison · 2018-07-20T17:59:26Z

That was it. I didn't realize there was an outage. The vagrant install works now but (don't laugh) I have to figure out what the admin login is. Otherwise vagrant works.

For the ansible install I still have to work out the glassfish start or restart.

pdurbin · 2018-07-20T18:00:51Z

@jmjamison no problem. Please see http://guides.dataverse.org/en/4.9.1/installation/installation-main.html#logging-in for the login:

username: dataverseAdmin
password: admin

jmjamison · 2018-07-20T18:05:20Z

Thank you

jmjamison · 2018-07-23T22:06:14Z

I've been able to get the glassfish install to run. But I have to manually kill the glassfish process and delete the files mentioned in the documentation for rerunning install. It doen't heart to reboot between reruns.

Now running into solr issues. The configsets directory seems to be missing from the solr 4.6.0 zip file. The install fails when ‘/usr/local/solr/server/solr/configsets/_default is copied to /usr/local/solr/server/solr/collection1

Also, I am not sure that 4.6.0 is even the correct version to be using but that is what the script is downloading. 4.6.0 is the version listed in my ~/defaults/main.yml file. I should probably do a pull from here since my fork may be out of date.

pdurbin · 2018-07-24T02:39:33Z

@jmjamison yeah, I would suggest doing a pull because @donsizemore already upgraded to the newer version of Solr as part of #17.

jmjamison · 2018-07-24T17:51:34Z

Update the repo. I'm back to glassfish problems - failing because there is another service using port 4848. I can't find anything that might be hold the port. Tried both restart and start. I'm going to have to do more glassfish research.

pameyer · 2018-07-24T17:58:26Z

4848 should be the glassfish admin port

jmjamison · 2018-07-24T18:06:09Z

Yes, when I've had glassfish install run to completion thats the port I use to log into the web interface.
What I get from netstat is:
tcp6 0 0 :::4848 :::* LISTEN 7014/java
The 7014 is:
root 7014 0.1 17.0 4220828 172700 ? Sl Jul23 1:20 /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7
That would be the java that ansible installs?

By the way, do you prefer posting here or the irc channel?

pameyer · 2018-07-24T18:12:14Z

Sometimes glassfish doesn't stop cleanly when asked to (systemd, init or asadmin) - I usually check the ps output and kill it if necessary.

I'm usually on irc (along with other folks who might have better suggestions)

jmjamison · 2018-07-24T18:15:17Z

Actually I do check and kill it manually but this time I can't find it.

pameyer · 2018-07-24T18:45:09Z

@jmjamison I might be interpreting the netstat output incorrectly, but it looks to me like it's listening on an IPv6 address. Would it be practical for you do disable IPv6 (aka - just use IPv4) on the system for troubleshooting?

jmjamison · 2018-07-24T20:33:13Z

I have to do some research. I've never done that so will look up disablig ip6 and try that.

pdurbin · 2018-07-25T00:17:20Z

@jmjamison hi! Sorry I missed you at http://irclog.iq.harvard.edu/dataverse/2018-07-24#i_70628 but my reply was "Are you still on Solr 4.x? collection1 exists out of the box on Solr 4.x. In Solr 7.x we have to create it."

jmjamison · 2018-07-26T00:30:18Z

I'm now using the latest. I've updated upstream so am up to date I believe. Also, disabled ipv6 which seems to be helping or solving the glassfish problem.

Solr version is 7.3. Its failing on the last step in dataverse-solr.yml (120-21). Creates Collection1 then fails for not being able to delete it.

It appears that I have to be sure to manuall kill both glassfish and solr between reruns.

Moving forward - now I'm failing on the deploy step.

jmjamison · 2018-08-01T00:15:37Z

I've tried deploying the war file from the glassfish web interface and on the command line as well as the script. It looks like glassfish crashes while deploying though I'm able to start it back up.

Tried downloading the dataverse installation zip file and running that. The error for that is that it can't connect to the local instance of PostgresQL as admin user. Postgres needs ipv6, but I've disabled ipv6 so I could get glassfish to install. For tomorrow I guess I'll try re-enabling ipv6 (since glassfish is up) and go from there.

jmjamison · 2018-08-01T21:51:49Z

Ok, problem solved (in an embarrassing manner). Memory I did not read the fine manual carefully enough. Vagrant ran fine because the script sets up necessary memory but my laptop has more than enough. My first time working on AWS and I didn't choose a large enough server. Install worked on a t2.large.

pdurbin · 2018-08-06T16:50:55Z

@jmjamison great news! I saw at http://irclog.iq.harvard.edu/dataverse/2018-08-02#i_70858 that you're having trouble uploading files, though. Do you still need any help?

pdurbin · 2018-08-06T16:58:29Z

@jmjamison nevermind! I see that you opened #20 about the file upload problem.

jmjamison closed this as completed Aug 1, 2018

pallinger pushed a commit to dsd-sztaki-hu/dataverse-ansible-deprecated that referenced this issue Jan 28, 2022

IQSS#9 correct jdbcurl logic

1a34e87

pallinger pushed a commit to dsd-sztaki-hu/dataverse-ansible-deprecated that referenced this issue Jan 28, 2022

IQSS#9 install pgdriver in lib/ instead of modules/

c51c34c

ansible install question - seems to be failing on last glassfish4 step #9

ansible install question - seems to be failing on last glassfish4 step #9

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This is the task where I'm having the problem. First this: / TASK [dataverse : install glassfish upstart script for \ Debian/Ubuntu] /

skipping: [dataverse] => {"changed": false, "skip_reason": "Conditional result was False", "skipped": true}

I presume it is false in that I'm installing on RedHat, then / TASK [dataverse : install glassfish upstart script for \ Debian/Ubuntu] /

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This is the task where I'm having the problem.
First this:
/ TASK [dataverse : install glassfish upstart script for
\ Debian/Ubuntu] /

I presume it is false in that I'm installing on RedHat, then
/ TASK [dataverse : install glassfish upstart script for
\ Debian/Ubuntu] /

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