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manta-1.0.0
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@x-chen x-chen released this 18 Aug 00:33
· 581 commits to master since this release
v1.0.0
3f94109

This release is a stable upgrade of v0.29.6, with the same SV calling methodology and consistent performance. The release introduces a new feature to generate bam files of evidence reads for SVs listed in the candidate vcf file. This feature was developed for debugging purposes, and the details are described in the section “Generating evidence bams” of the User Guide.
https://github.com/Illumina/manta/tree/master/docs/userGuide#generating-evidence-bams

Full Changelog:

  • MANTA-290 add a debugging option to generate candidate SV evidence BAMs
  • [#36] support setting SGE task runtime limit
  • Format change of de novo calls, moving DQ from INFO to FORMAT
  • [#40] improve robustness to user locale settings
  • close infrequent memory leak in hts_streamer
  • A number of changes in build and docs

manta-1.0.0.centos5_x86_64.tar.bz2 is a binary distribution for 64-bit linux. This is built on CentOS 5 with all dependencies except glibc statically linked. It is expected to run without modification on most linux distributions.

The manta-1.0.0.release_src.tar.bz2 download is the full source code release. The “Source code” downloads are generated by GitHub and are incomplete as they are missing version numbers and build system changes to improve portability.

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