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manta-1.2.1
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@x-chen x-chen released this 09 Oct 23:09
· 347 commits to master since this release
v1.2.1
c96587d

This is a minor update release:

Added

  • Use the BAM mate CIGAR (MC) tag, when present, to improve the accuracy of accessing if a read has extended into adapter sequence (MANTA-1097)
  • Add sanity check of specified target regions during configuration (MANTA-1218)
    • A configuration error, instead of a runtime error, will be generated if the chromosome portion of the region does not match a chromosome name from the input reference sequence.

Changed

  • Change candidateSV.vcf to include all candidates used to generate final calls (MANTA-1039)
    • The candidates may include redundanta entries.
    • Redundant candidates are still reduced to a single best call in the final call output.
  • Move changelog to markdown format (MANTA-1245)

Fixed

  • Fix an issue in the contig output feature introduced in v1.2.0/MANTA-1207, such that contigs are provided for all SV types (MANTA-1236)

manta-1.2.1.centos6_x86_64.tar.bz2 is a binary distribution for 64-bit linux. This is built on CentOS 6 with all dependencies except glibc statically linked. It is expected to run without modification on most linux distributions.

The manta-1.2.1.release_src.tar.bz2 download is the full source code release. The “Source code” downloads are generated by GitHub and are incomplete as they are missing version numbers and build system changes to improve portability.

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