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130 Open 110 Closed
130 Open 110 Closed
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Issues list

Properly paired reads
#245 opened Nov 20, 2024 by IsMM15
How is strand bias calculated and what does it mean in this context?
#243 opened Aug 14, 2024 by CraigJAnderson
Will a insertion/deletion at the end of a callRegion be called?
#242 opened Jul 23, 2024 by ray1919
Error calling bam files derived from standard ONT
#241 opened Apr 26, 2024 by nparmalee
Python3
#240 opened Mar 22, 2024 by lculibrk
1
call mtDNA variants from scRNA or WGS
#239 opened Mar 15, 2024 by isadeghi87
DEVELOPER_MODE is true in src release tarballs
#237 opened Feb 8, 2024 by aowenson-imm
GQ and PL fields
#236 opened Jan 9, 2024 by mashid
Strelka filtering out important variant
#235 opened Dec 4, 2023 by yusufzhc
Scripts to extract variant allele frequency (VAF)
#234 opened Oct 18, 2023 by maximus3219
1
Meaning of taskExitCode -9
#232 opened Aug 1, 2023 by Jessime
1
All variants being labeled as "LowEVS"
#231 opened Jul 19, 2023 by ElizabethBorden
1
Incorrect handling of non-N nucleotides with quality zero after Q-score binning
#230 opened Jul 5, 2023 by ivan-mh
Failing to index VCF file
#229 opened May 17, 2023 by acboulet
Number of AD, ADF and ADR should be "R"
#228 opened May 4, 2023 by christopher-schroeder
inconsistent reproducibility of variants
#227 opened Mar 21, 2023 by anoronh4
Only the first Genome Segment called when putting entire chromosome in .bed file
#226 opened Feb 7, 2023 by sergeyvilov
How to detect somatic mutations with allele frequencies nearly 0.01?
#225 opened Jan 10, 2023 by wuyuling327
1
Long error using the code below
#224 opened Dec 2, 2022 by HyojeenLee
Which command to use for somatic calling and RNA sequencing?
#223 opened Dec 2, 2022 by HyojeenLee
CONFIGURATION ERROR: Reference genome mismatch:
#222 opened Dec 2, 2022 by HyojeenLee
Does input fastq need process of splicing in advance?
#221 opened Dec 1, 2022 by HyojeenLee
make process bug
#220 opened Nov 29, 2022 by hzongyao
INFO/DP field not reported
#219 opened Oct 11, 2022 by SusiJo
1
Got WARNING and ERROR info when using StrelkaSomaticWorkflow
#218 opened Oct 9, 2022 by Dragonlongzhilin
2
ProTip! no:milestone will show everything without a milestone.