chore: add pyflakes rules to ruff

docs/source/examples/comparing-pyprobe-performance.ipynb

@@ -490,17 +490,15 @@
     "        overwrite_existing=True,\n",
     "        compression_priority=priority,\n",
     "    )\n",
-    "    file_sizes[i] = os.path.getsize(\n",
-    "        data_directory + f\"/sample_data_neware_test.parquet\"\n",
-    "    )\n",
+    "    file_sizes[i] = os.path.getsize(data_directory + \"/sample_data_neware_test.parquet\")\n",
     "    pyprobe_time, _, _ = measure_pyprobe(repeats, \"sample_data_neware_test.parquet\")\n",
     "    times[i, :] = pyprobe_time[-1, :]\n",
     "\n",
     "file_sizes = np.append(\n",
     "    file_sizes,\n",
     "    [\n",
-    "        os.path.getsize(data_directory + f\"/sample_data_neware.xlsx\"),\n",
-    "        os.path.getsize(data_directory + f\"/sample_data_neware.csv\"),\n",
+    "        os.path.getsize(data_directory + \"/sample_data_neware.xlsx\"),\n",
+    "        os.path.getsize(data_directory + \"/sample_data_neware.csv\"),\n",
     "    ],\n",
     ")\n",
     "\n",

pyprobe/analysis/cycling.py

@@ -1,11 +1,10 @@
 """A module for the Cycling class."""
 
 import polars as pl
-from deprecated import deprecated
-from pydantic import BaseModel, validate_call
+from pydantic import validate_call
 
 from pyprobe.analysis.utils import AnalysisValidator
-from pyprobe.filters import Experiment, get_cycle_column
+from pyprobe.filters import get_cycle_column
 from pyprobe.pyprobe_types import FilterToCycleType
 from pyprobe.result import Result
 

pyprobe/analysis/differentiation.py

@@ -4,8 +4,7 @@
 
 import numpy as np
 import polars as pl
-from deprecated import deprecated
-from pydantic import BaseModel, validate_call
+from pydantic import validate_call
 
 import pyprobe.analysis.base.differentiation_functions as diff_functions
 from pyprobe.analysis.utils import AnalysisValidator

pyprobe/analysis/pulsing.py

@@ -3,7 +3,6 @@
 from typing import List
 
 import polars as pl
-from deprecated import deprecated
 from pydantic import BaseModel, validate_call
 
 from pyprobe.analysis.utils import AnalysisValidator

pyprobe/analysis/smoothing.py

@@ -6,9 +6,8 @@
 
 import numpy as np
 import polars as pl
-from deprecated import deprecated
 from numpy.typing import NDArray
-from pydantic import BaseModel, validate_call
+from pydantic import validate_call
 from scipy import interpolate
 from scipy.interpolate import make_smoothing_spline
 from scipy.signal import savgol_filter

pyprobe/plot.py

@@ -1,16 +1,9 @@
 """A module to contain plotting functions for PyProBE."""
 
 from functools import wraps
-from typing import TYPE_CHECKING, Any, Callable, Dict, List, Optional, Tuple
+from typing import TYPE_CHECKING, Any, Callable, Dict, Tuple
 
-import numpy as np
-import plotly.graph_objects as go
 import polars as pl
-from deprecated import deprecated
-from numpy.typing import NDArray
-from plotly.express.colors import sample_colorscale
-from plotly.subplots import make_subplots
-from sklearn.preprocessing import minmax_scale
 
 if TYPE_CHECKING:
     from pyprobe.result import Result

pyproject.toml

@@ -106,6 +106,7 @@ select = [
     "I",    # isort: Check and enforce import ordering
     "TID",  # flake8-tidy-imports
     "SLF001",  # private-member-access: Checks for accesses on "private" class members.
+    "F",   # pyflakes: Check for errors in Python code
 ]
 
 [tool.ruff.lint.pydocstyle]

tests/test_dashboard.py

@@ -8,7 +8,6 @@
 import polars as pl
 import polars.testing as pl_testing
 import pytest
-import streamlit as st
 from streamlit.testing.v1 import AppTest
 
 from pyprobe.dashboard import (
@@ -199,7 +198,7 @@ def test_dashboard_select_experiment():
     def select_exp_mini_app():
         from unittest.mock import MagicMock
 
-        import streamlit as st
+        import streamlit as st  # noqa: F811
 
         from pyprobe.dashboard import _Dashboard
 
@@ -262,7 +261,7 @@ def test_dashboard_run(cell_fixture):
     def run_mini_app():
         from unittest.mock import patch
 
-        import streamlit as st
+        import streamlit as st  # noqa: F811
 
         from pyprobe import Cell
         from pyprobe.dashboard import _Dashboard

tests/test_plot.py

@@ -1,12 +1,8 @@
 """Tests for the Plot class."""
 
-import numpy as np
-import plotly.graph_objects as go
 import polars as pl
 import polars.testing as pl_testing
 import pytest
-from plotly.express.colors import sample_colorscale
-from sklearn.preprocessing import minmax_scale
 
 from pyprobe import plot
 from pyprobe.result import Result