Feature update release of Anima scripts
Anima scripts is a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform for most scripts (as long as python is available for your system), except for atlasing scripts that require an OAR scheduler. If you are using Anima scripts for your research, please take the time to:
- Cite the relevant papers referenced in the documentation
- Add a sentence in your acknowledgments section or in the methods part of your paper referencing the RRID of Anima scripts: RRID:SCR_017072, and the one of Anima : RRID:SCR_017017
- if possible, add the link to Anima website: https://anima.irisa.fr
This new release contains the following updates:
- Add new EM based three tissues segmentation script
- Add large field of view brain masking option e.g. for newborn images
- temporary folders are now located in current folder and can be kept after script run
- bug correction in diffusion image preprocessing (siemens dicom handling)
- anima scripts now requires Anima v4.2 as the minimum version to run all scripts
More details on the scripts are available in the documentation.