Fix container paths

JPejovicApis · Jun 20, 2023 · 4163e2b · 4163e2b
1 parent 97b910b
commit 4163e2b
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Showing 6 changed files with 7 additions and 7 deletions.
diff --git a/modules/nf-core/cellranger/count/main.nf b/modules/nf-core/cellranger/count/main.nf
@@ -2,7 +2,7 @@ process CELLRANGER_COUNT {
  tag "$meta.id"
  label 'process_high'
 
- container "nf-core/cellranger:7.1.0"
+ container "nfcore/cellranger:7.1.0"
 
  // Exit if running this module with -profile conda / -profile mamba
  if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
@@ -24,7 +24,7 @@ process CELLRANGER_COUNT {
  def args = task.ext.args ?: ''
  def prefix = task.ext.prefix ?: "${meta.id}"
  def reference_name = reference.name
- template: "cellranger_count.py"
+ template "cellranger_count.py"
 
  stub:
  def prefix = task.ext.prefix ?: "${meta.id}"

diff --git a/modules/nf-core/cellranger/mkgtf/main.nf b/modules/nf-core/cellranger/mkgtf/main.nf
@@ -2,7 +2,7 @@ process CELLRANGER_MKGTF {
  tag "$gtf"
  label 'process_low'
 
- container "nf-core/cellranger:7.1.0"
+ container "nfcore/cellranger:7.1.0"
 
  // Exit if running this module with -profile conda / -profile mamba
  if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {

diff --git a/modules/nf-core/cellranger/mkref/main.nf b/modules/nf-core/cellranger/mkref/main.nf
@@ -2,7 +2,7 @@ process CELLRANGER_MKREF {
  tag "$fasta"
  label 'process_high'
 
- container "nf-core/cellranger:7.1.0"
+ container "nfcore/cellranger:7.1.0"
 
  // Exit if running this module with -profile conda / -profile mamba
  if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {

diff --git a/modules/nf-core/cellranger/mkvdjref/main.nf b/modules/nf-core/cellranger/mkvdjref/main.nf
@@ -2,7 +2,7 @@ process CELLRANGER_MKVDJREF {
  tag "$fasta"
  label 'process_high'
 
- container "nf-core/cellranger:7.1.0"
+ container "nfcore/cellranger:7.1.0"
 
  // Exit if running this module with -profile conda / -profile mamba
  if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {

diff --git a/modules/nf-core/cellranger/multi/main.nf b/modules/nf-core/cellranger/multi/main.nf
@@ -2,7 +2,7 @@ process CELLRANGER_MULTI {
  tag "$meta.id"
  label 'process_high'
 
- container "nf-core/cellranger:7.1.0"
+ container "nfcore/cellranger:7.1.0"
 
  // Exit if running this module with -profile conda / -profile mamba
  if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {

diff --git a/modules/nf-core/cellranger/vdj/main.nf b/modules/nf-core/cellranger/vdj/main.nf
@@ -2,7 +2,7 @@ process CELLRANGER_VDJ {
  tag "${meta.id}"
  label 'process_high'
 
- container "nf-core/cellranger:7.1.0"
+ container "nfcore/cellranger:7.1.0"
 
  // Exit if running this module with -profile conda / -profile mamba
  if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {