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Jabref5 Portable Linux #5821

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zenny opened this issue Jan 7, 2020 · 2 comments · Fixed by #5923
Closed

Jabref5 Portable Linux #5821

zenny opened this issue Jan 7, 2020 · 2 comments · Fixed by #5923
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os: linux status: waiting-for-feedback The submitter or other users need to provide more information about the issue

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@zenny
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zenny commented Jan 7, 2020

Hi,

Trying to run Jabref Portable from http://builds.jabref.org/master/JabRef-5.0-portable_linux.tar.gz

But it gives an error in the console as soon as launched:

ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console...

** (JabRef:8720): WARNING **: Couldn't connect to accessibility bus: Failed to connect to socket /tmp/dbus-RjLjqQPZyV: Connection refused
Importing in unknown format: ./JabRef
Error opening file './JabRef': Could not find a suitable import format.

(JabRef:8720): Gdk-WARNING **: XSetErrorHandler() called with a GDK error trap pushed. Don't do that.

However, the app runs. As soon as I try to type anything in the search bar, it outputs the following error and does not go forth:

java.lang.NullPointerException
	at org.jabref/org.jabref.gui.search.GlobalSearchBar.lambda$new$10(Unknown Source)
	at java.base/java.util.Optional.ifPresent(Unknown Source)
	at org.jabref/org.jabref.gui.search.GlobalSearchBar.lambda$new$11(Unknown Source)
	at org.jabref.merged.module/org.fxmisc.easybind.EasyBind.lambda$subscribe$12(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$Generic.fireValueChangedEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source)
	at org.jabref.merged.module/javafx.beans.property.ObjectPropertyBase.fireValueChangedEvent(Unknown Source)
	at org.jabref.merged.module/javafx.beans.property.ObjectPropertyBase.markInvalid(Unknown Source)
	at org.jabref.merged.module/javafx.beans.property.ObjectPropertyBase.set(Unknown Source)
	at org.jabref.merged.module/javafx.beans.property.ObjectProperty.setValue(Unknown Source)
	at org.jabref/org.jabref.gui.StateManager.setSearchQuery(Unknown Source)
	at org.jabref/org.jabref.gui.search.GlobalSearchBar.performSearch(Unknown Source)
	at org.jabref/org.jabref.gui.search.GlobalSearchBar.lambda$new$8(Unknown Source)
	at org.jabref/org.jabref.gui.util.BindingsHelper$BidirectionalBinding.updateLocked(Unknown Source)
	at org.jabref/org.jabref.gui.util.BindingsHelper$BidirectionalBinding.changedB(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$Generic.fireValueChangedEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source)
	at org.jabref.merged.module/javafx.scene.control.TextInputControl$TextProperty.fireValueChangedEvent(Unknown Source)
	at org.jabref.merged.module/javafx.scene.control.TextInputControl$TextProperty.markInvalid(Unknown Source)
	at org.jabref.merged.module/javafx.scene.control.TextInputControl$TextProperty.controlContentHasChanged(Unknown Source)
	at org.jabref.merged.module/javafx.scene.control.TextInputControl.lambda$new$0(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper$SingleInvalidation.fireValueChangedEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source)
	at org.jabref.merged.module/javafx.scene.control.TextField$TextFieldContent.insert(Unknown Source)
	at org.jabref.merged.module/javafx.scene.control.TextInputControl.replaceText(Unknown Source)
	at org.jabref.merged.module/javafx.scene.control.TextInputControl.updateContent(Unknown Source)
	at org.jabref.merged.module/javafx.scene.control.TextInputControl.replaceText(Unknown Source)
	at org.jabref.merged.module/javafx.scene.control.skin.TextFieldSkin.replaceText(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.scene.control.behavior.TextFieldBehavior.replaceText(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.scene.control.behavior.TextInputControlBehavior.defaultKeyTyped(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.scene.control.behavior.TextInputControlBehavior.lambda$keyMapping$62(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.scene.control.inputmap.InputMap.handle(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
	at org.jabref.merged.module/javafx.event.Event.fireEvent(Unknown Source)
	at org.jabref.merged.module/javafx.scene.Scene$KeyHandler.process(Unknown Source)
	at org.jabref.merged.module/javafx.scene.Scene.processKeyEvent(Unknown Source)
	at org.jabref.merged.module/javafx.scene.Scene$ScenePeerListener.keyEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler$KeyEventNotification.run(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler$KeyEventNotification.run(Unknown Source)
	at java.base/java.security.AccessController.doPrivileged(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleKeyEvent$1(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(Unknown Source)
	at org.jabref.merged.module/com.sun.javafx.tk.quantum.GlassViewEventHandler.handleKeyEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.glass.ui.View.handleKeyEvent(Unknown Source)
	at org.jabref.merged.module/com.sun.glass.ui.View.notifyKey(Unknown Source)
	at org.jabref.merged.module/com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
	at org.jabref.merged.module/com.sun.glass.ui.gtk.GtkApplication.lambda$runLoop$11(Unknown Source)
	at java.base/java.lang.Thread.run(Unknown Source)

Any input?

Cheers,
/z
@Siedlerchr
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Thanks, could you please add some more information about your system? Usually it's sufficient if you copy the info from the About dialog of JabRef.
However, it might help if you could add which linux distro you are using

@Siedlerchr Siedlerchr added os: linux status: waiting-for-feedback The submitter or other users need to provide more information about the issue labels Jan 7, 2020
@zenny
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zenny commented Jan 16, 2020

@Siedlerchr Please find below the output of the jabref about dialog:

JabRef 5.0-beta.94--2020-01-03--f11949f
Linux 4.4.0-148-lowlatency amd64 
Java 13.0.1

BTW, I am still on ubuntu/lxle 14.04, fyi. Thanks!

@Siedlerchr Siedlerchr mentioned this issue Feb 9, 2020
Merged
5 tasks
koppor pushed a commit that referenced this issue Jan 15, 2022
Squashed 'buildres/csl/csl-styles/' changes from f78c707..5563ccc
aaab4e8 
5563ccc Update american-society-for-microbiology.csl (#5842)
19ab80f Merge pull request #5843 from POBrien333/patch-1002
d4a6c6d double trouble
424f7fe in-text >> superscript for T&F ACS style
605253c Merge pull request #5837 from POBrien333/patch-998
eb5417d Merge pull request #5838 from alessandro-gentilini/patch-1
7d2d3f5 Fix typo
9f557b5 Re-indent CSL styles
f587e60 polyglot style
3a3fe2c Create journal-fur-kulturpflanzen-journal-of-cultivated-plants.csl
cb24633 Merge pull request #5826 from dstark/patch-7
2590a6c Merge pull request #5833 from POBrien333/patch-997
5b2481e Create nist-techpubs-jres.csl (#5756)
d2a1a49 Re-indent CSL styles
42c51d1 Update tyndale-bulletin.csl
8dae693 rework style
070586b Localize IEEE dates (#5835)
588fbfe Hopefully fix sorting in CSE author-date (#5834)
1291d72 Update physiotherapy-theory-and-practice.csl
1a64076 New Style for "Neue Kriminalpolitik (Deutsch)" (#5586)
eac93a0 Create physiotherapy-theory-and-practice.csl
2e7a9f6 Merge pull request #5832 from POBrien333/patch-996
4dfad5f Update administrative-science-quarterly.csl
f56db0f Merge pull request #5829 from benthamite/patch-1
526b0b3 Update effective-altruism-wiki.csl
e5b11eb Update effective-altruism-wiki.csl
f2a7301 Update effective-altruism-wiki.csl
5b166c2 Update university-of-roehampton-harvard.csl (#5831)
b231514 Update european-society-of-cardiology.csl (#5519)
dbd902c Re-indent CSL styles
fe8892b Update effective-altruism-wiki.csl
734fa7d Update effective-altruism-wiki.csl
2430a32 Create effective-altruism-wiki.csl
a5101b6 update modern-pathology.csl (#5828)
16f77c8 Update tyndale-bulletin.csl
ea8804e Create the-korean-journal-of-mycology.csl (#5822)
22d8be0 Patch 3 (#5825)
0220ba2 Create jcom.csl (#5819)
cd7b72b Create taylor-and-francis-council-of-science-editors-numeric.csl (#5824)
0033383 Create gomis-senegalese-medicine-thesis.csl (#5774)
b221bcc Create mycobiology.csl (#5821)
d7056f9 Re-indent CSL styles
04ae08b Update tyndale-bulletin.csl
24bd577 Re-indent CSL styles
e08d431 clean up logging
f6ac2a6 Update tyndale-bulletin.csl
e4c07f8 this should be the PR repo name
7f9936c fetch pull request from originating repo
f232f51 Update tyndale-bulletin.csl
e2ae4fc Update tyndale-bulletin.csl
f09f8db Update Sheldon to csl-styles 2.0
a4d7dec re-indent style
a903664 sheldon
7db75fc sheldon
f08dc96 sheldon
35b8bfa sheldon
04e28ca pull req checkout
9c9d061 pull req checkout
9249490 sheldon reindent
9792be6 sheldon reindent
3bced06 reindent & commit
7cc9735 Update styles README and GitHub Actions with 1.0.2 information (#5803)
205c4ea remaining dependents
9458056 fix broken styles
07ba7af fix dependents
e2e7842 Fix term hacks for transition to CSL 1.0.2 (#5801)
5c8c5e9 Replace "sub verbo" with "sub-verbo" (#5799)
7ec637c Fix CSL styles
bcd3054 update to csl/citeproc-ruby 2.0
ec13830 bundle update

git-subtree-dir: buildres/csl/csl-styles
git-subtree-split: 5563ccc
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Disable search when no library is opened JabRef/jabref
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@Siedlerchr @zenny