Last Minute Changes 5.0-beta

.github/outdatedDependencies.md

@@ -0,0 +1,5 @@
+---
+title: Outdated dependencies
+labels: code-quality, dependencies
+---
+[There are outdated dependencies!](https://github.com/JabRef/jabref/actions?query=is%3Afailure+workflow%3A%22Check+dependencies%22) 

.github/workflows/check-outdated-dependencies.yml

@@ -0,0 +1,29 @@
+name: Check dependencies
+
+on: 
+  schedule:
+    - cron:  '0 0 * * TUE' # Run every Tuesday (after dependabot, which runs Monday)
+
+jobs:
+  checkDependencies:
+    name: Check dependencies
+    runs-on: ubuntu-latest
+    steps:
+    - name: Checkout source
+      uses: actions/checkout@v1
+      with:
+        depth: 1
+        submodules: false
+    - name: Set up JDK
+      uses: actions/setup-java@v1
+      with:
+        java-version: 13
+    - name: Look for outdated dependencies
+      run: ./gradlew -q checkOutdatedDependencies
+    - name: Report issues
+      if: failure()
+      uses: JasonEtco/create-an-issue@master
+      env: 
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      with:
+        filename: .github/outdatedDependencies.md

.github/workflows/deployment.yml

@@ -54,6 +54,11 @@ jobs:
           ${{ runner.OS }}-gradle-${{ env.cache-name }}-
           ${{ runner.OS }}-gradle-
           ${{ runner.OS }}-
+    - uses: actions/cache@v1
+      name: Cache gradle wrapper
+      with:
+        path: ~/.gradle/wrapper
+        key: ${{ runner.os }}-gradle-${{ hashFiles('gradle/wrapper/gradle-wrapper.properties') }}
     - name: Download jpackage
       # We need to download jpackage from https://jdk.java.net/jpackage/
       run: |

.github/workflows/tests.yml

@@ -0,0 +1,236 @@
+name: Tests
+
+on: [push]
+
+jobs:
+  checkstyle:
+    name: Checkstyle
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v1
+        with:
+          depth: 1
+          submodules: false
+      - name: Set up JDK
+        uses: actions/setup-java@v1
+        with:
+          java-version: 13
+      - uses: actions/cache@v1
+        name: Restore gradle chache
+        with:
+          path: ~/.gradle/caches
+          key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle') }}
+          restore-keys: |
+            ${{ runner.OS }}-gradle-${{ env.cache-name }}-
+            ${{ runner.OS }}-gradle-
+            ${{ runner.OS }}-
+      - uses: actions/cache@v1
+        name: Restore gradle wrapper
+        with:
+          path: ~/.gradle/wrapper
+          key: ${{ runner.os }}-gradle-${{ hashFiles('gradle/wrapper/gradle-wrapper.properties') }}
+      - name: Run checkstyle
+        run: ./gradlew checkstyleMain checkstyleTest checkstyleJmh
+  tests:
+    name: Unit tests
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v1
+        with:
+          depth: 1
+          submodules: false
+      - name: Set up JDK
+        uses: actions/setup-java@v1
+        with:
+          java-version: 13
+      - uses: actions/cache@v1
+        name: Restore gradle chache
+        with:
+          path: ~/.gradle/caches
+          key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle') }}
+          restore-keys: |
+            ${{ runner.OS }}-gradle-${{ env.cache-name }}-
+            ${{ runner.OS }}-gradle-
+            ${{ runner.OS }}-
+      - uses: actions/cache@v1
+        name: Restore gradle wrapper
+        with:
+          path: ~/.gradle/wrapper
+          key: ${{ runner.os }}-gradle-${{ hashFiles('gradle/wrapper/gradle-wrapper.properties') }}
+      - name: Run tests
+        run: xvfb-run --auto-servernum ./gradlew check -x checkstyleJmh -x checkstyleMain -x checkstyleTest
+        env:
+          CI: "true"
+      - name: Format failed test results
+        if: failure()
+        run: |
+          sudo apt-get install -qq -y xml-twig-tools xsltproc
+          scripts/after-failure.sh  
+  databasetests:
+    name: Database tests
+    runs-on: ubuntu-latest
+    services:
+      postgres:
+        image: postgres:10.8
+        env:
+          POSTGRES_USER: postgres
+          POSTGRES_PASSWORD: postgres
+          POSTGRES_DB: postgres
+        ports:
+          - 5432:5432
+        # needed because the postgres container does not provide a healthcheck
+        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v1
+        with:
+          depth: 1
+          submodules: false
+      - name: Set up JDK
+        uses: actions/setup-java@v1
+        with:
+          java-version: 13
+      - uses: actions/cache@v1
+        name: Restore gradle chache
+        with:
+          path: ~/.gradle/caches
+          key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle') }}
+          restore-keys: |
+            ${{ runner.OS }}-gradle-${{ env.cache-name }}-
+            ${{ runner.OS }}-gradle-
+            ${{ runner.OS }}-
+      - uses: actions/cache@v1
+        name: Restore gradle wrapper
+        with:
+          path: ~/.gradle/wrapper
+          key: ${{ runner.os }}-gradle-${{ hashFiles('gradle/wrapper/gradle-wrapper.properties') }}
+      - name: Run tests on PostgreSQL
+        run: ./gradlew databaseTest --rerun-tasks
+        env:
+          CI: "true"
+          DBMS: "postgresql"
+      - name: Shutdown Ubuntu MySQL
+        run: sudo service mysql stop # Shutdown the Default MySQL, "sudo" is necessary, please not remove it
+      - name: Start custom MySQL
+        uses: mirromutth/mysql-action@v1.1
+        with:
+          host port: 3800
+          container port: 3307
+          character set server: 'utf8'
+          collation server: 'utf8_general_ci'
+          mysql version: '8.0'
+          mysql database: 'jabref'
+          mysql root password: 'root'
+      - name: Run tests on MySQL
+        run: ./gradlew databaseTest --rerun-tasks
+        env:
+          CI: "true"
+          DBMS: "mysql"
+  fetchertests:
+    name: Fetcher tests
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v1
+        with:
+          depth: 1
+          submodules: false
+      - name: Set up JDK
+        uses: actions/setup-java@v1
+        with:
+          java-version: 13
+      - uses: actions/cache@v1
+        name: Restore gradle chache
+        with:
+          path: ~/.gradle/caches
+          key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle') }}
+          restore-keys: |
+            ${{ runner.OS }}-gradle-${{ env.cache-name }}-
+            ${{ runner.OS }}-gradle-
+            ${{ runner.OS }}-
+      - uses: actions/cache@v1
+        name: Restore gradle wrapper
+        with:
+          path: ~/.gradle/wrapper
+          key: ${{ runner.os }}-gradle-${{ hashFiles('gradle/wrapper/gradle-wrapper.properties') }}
+      - name: Run fetcher tests
+        run: ./gradlew fetcherTest
+        env:
+          CI: "true"
+  guitests:
+    name: GUI tests
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v1
+        with:
+          depth: 1
+          submodules: false
+      - name: Set up JDK
+        uses: actions/setup-java@v1
+        with:
+          java-version: 13
+      - uses: actions/cache@v1
+        name: Restore gradle chache
+        with:
+          path: ~/.gradle/caches
+          key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle') }}
+          restore-keys: |
+            ${{ runner.OS }}-gradle-${{ env.cache-name }}-
+            ${{ runner.OS }}-gradle-
+            ${{ runner.OS }}-
+      - uses: actions/cache@v1
+        name: Restore gradle wrapper
+        with:
+          path: ~/.gradle/wrapper
+          key: ${{ runner.os }}-gradle-${{ hashFiles('gradle/wrapper/gradle-wrapper.properties') }}
+      - name: Run GUI tests
+        run: xvfb-run --auto-servernum ./gradlew guiTest
+        env:
+          CI: "true"
+  codecoverage:
+    name: Code coverage
+    runs-on: ubuntu-latest
+    services:
+      postgres:
+        image: postgres:10.8
+        env:
+          POSTGRES_USER: postgres
+          POSTGRES_PASSWORD: postgres
+          POSTGRES_DB: postgres
+        ports:
+          - 5432:5432
+        # needed because the postgres container does not provide a healthcheck
+        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v1
+        with:
+          depth: 1
+          submodules: false
+      - name: Set up JDK
+        uses: actions/setup-java@v1
+        with:
+          java-version: 13
+      - uses: actions/cache@v1
+        name: Restore gradle chache
+        with:
+          path: ~/.gradle/caches
+          key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle') }}
+          restore-keys: |
+            ${{ runner.OS }}-gradle-${{ env.cache-name }}-
+            ${{ runner.OS }}-gradle-
+            ${{ runner.OS }}-
+      - uses: actions/cache@v1
+        name: Restore gradle wrapper
+        with:
+          path: ~/.gradle/wrapper
+          key: ${{ runner.os }}-gradle-${{ hashFiles('gradle/wrapper/gradle-wrapper.properties') }}  
+      - name: Update test coverage metrics
+        run: xvfb-run --auto-servernum ./gradlew jacocoTestReport && bash <(curl -s https://codecov.io/bash);
+        env:
+          CI: "false" # we pretend to run locally - even if tests fail on the CI, they count towards test coverage
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+          DBMS: "postgresql"