- Overview of Connectomics
- Distinguish Connectome
- Accessible Ground Truth
- Background
- Reference
- Materials
- Group
- Contribution
(we are focusing synapse-level connectomics datasets generated by the volume electron microscopy)
Year | Name | Conference | Link |
---|---|---|---|
SNEMI3D | |||
CREMI | |||
ISBI 2012 |
Full set | Subset | Connectome | Link |
---|---|---|---|
FAFB | CREMI-A/B/C | FlyWire | FlyWire |
Kasthuri15 | SNEMI3D/AC3/AC4 | two fully manually reconstructed cylinders | VAST |
Hemi-brain | Hemi-brain training set | LSD | |
FIB-25 | FIB-25 training set | LSD | |
J0126 | J0126 training set | LSD/FFN |
- Mouse Visual Cortex ~ 1 mm3, Auto TEM
- Human Cerebral Cortex ~ 1 mm3, MultiBeam SEM
- Mouse Cortical-Basal-Ganglia-Thalamic Loop ~ 10 mm3, Tilt TEM Tomography
- Mouse Hippocampus ~ 10 mm3, MultiBeam SEM with Ion Beam Milling
Name for short |
Size μm3 |
Resolution nm3 |
GT Size μm3 |
GT Resolution nm3 |
GT Size voxel |
Link | Note |
---|---|---|---|---|---|---|---|
AxonEM | 30x30x30 | 7x7x40 | 7x7x40 | grand-challenge | subsets of MICrONS and H01 | ||
8x8x30 | 8x8x30 | ||||||
H01 | 2,000x3,000x175 | 4x4x30 | 8x8x30 |
- Kornfeld and Denk. Progress and Remaining Challenges in High-throughput Volume Electron Microscopy. 2018
- Kievits et al. How Innovations in Methodology Offer New Prospects for Volume Electron Microscopy. 2022
- Beyer et al. A Survey of Visualization and Analysis in High-Resolution Connectomics. 2022
- Jefferis et al. Scaling up Connectomics: The Road to a Whole Mouse Brain Connectome. 2023
- connectomics-vis-survey.github.io
- braincircuits.io/resources
- tianyan.gitlab.io/braindata/connectomics-survey
- github.com/subeeshvasu/Awesome-Neuron-Segmentation-in-EM-Images
- github.com/Levishery/connectomic-paper-datasets
(including the private communication)
- Hao Zhai
- Liuyun Jiang
- Xinghui Zhao
- Yanchao Zhang
- Jinyue Guo
Please contribute Pull Request & Issue if you think a new dataset or a relevant paper is missing.
Let's enjoy the beauty of EM data and the awesome micro-connectomes!