Update ci.yml #27

	name: Generate Docs
	on:
	push:
	branches: [ main ]

	workflow_dispatch:

	jobs:
	generate:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- uses: actions/checkout@v3
	- uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: '3.10'
	- name: Install Dependencies
	run: \|
	git config user.name github-actions
	git config user.email github-actions@github.com
	python -m pip install -e .[molecules]
	python -m pip install sphinx sphinx-rtd-theme m2r mistune==0.8.4

	- uses: actions/checkout@v3
	with:
	ref: docs
	- name: Update Docs to Main
	run: \|
	git fetch --all
	git reset --hard origin/main

	- name: Generate Documentation
	run: \|
	cd docs
	rm .html .doctree \|\| true
	sphinx-apidoc -f -o . ..
	make clean
	make html
	cp -r _build/html/* .
	cp -r _build/doctrees/* .
	echo "" > .nojekyll

	- name: Push to Docs Branch
	run: \|
	git add .
	git commit -m "Automated Docs Update" -a \|\| true
	git push -f

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