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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 74 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 32 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 264 repositories
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 31 0 Updated Sep 20, 2024
  • doi_common Public

    Library of common DOI-related functions for Python

    JaneliaSciComp/doi_common’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Sep 20, 2024
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 3 BSD-3-Clause 2 0 2 Updated Sep 20, 2024
  • x2s3 Public

    S3 Proxy

    JaneliaSciComp/x2s3’s past year of commit activity
    Python 1 0 0 1 Updated Sep 20, 2024
  • colormipsearch Public

    Distributed Color Depth MIP Search

    JaneliaSciComp/colormipsearch’s past year of commit activity
    Java 0 BSD-3-Clause 1 0 1 Updated Sep 20, 2024
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    JaneliaSciComp/neuronbridge-precompute’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 20, 2024
  • tethered-fly-pipeline Public

    Nextflow pipeline for processing tethered fly videos using APT

    JaneliaSciComp/tethered-fly-pipeline’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Sep 20, 2024
  • ShroffCelegansModels.jl Public
    JaneliaSciComp/ShroffCelegansModels.jl’s past year of commit activity
    Julia 2 MIT 0 0 32 Updated Sep 20, 2024
  • G4_Display_Tools Public

    Collection of tools for the G4 LED arena displays.

    JaneliaSciComp/G4_Display_Tools’s past year of commit activity
    MATLAB 2 CC-BY-4.0 2 11 0 Updated Sep 19, 2024
  • neuronbridge Public

    EM/LM neuron search

    JaneliaSciComp/neuronbridge’s past year of commit activity
    JavaScript 4 BSD-3-Clause 1 0 13 Updated Sep 19, 2024
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