Merge pull request ufs-community#21 from MinsukJi-NOAA/feature/alt_co…

…mpsetrun

tests/.gitignore

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+/log_*/

tests/RegressionTests_hera.intel.log

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+Tue Apr 21 19:21:53 UTC 2020
+Start Regression test
+
+
+baseline dir = /scratch1/NCEPDEV/stmp4/Minsuk.Ji/S2S_RT/REGRESSION_TEST/RT-Baselines_cold
+mediator baseline dir = /scratch1/NCEPDEV/stmp4/Minsuk.Ji/S2S_RT/REGRESSION_TEST/MEDIATOR
+working dir  = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_246089/cpld_fv3_mom6_cice_cold_atm_flux
+Checking test 001 cpld_fv3_mom6_cice_cold_atm_flux results ....
+ Comparing phyf001.tile1.nc .........OK
+ Comparing phyf001.tile2.nc .........OK
+ Comparing phyf001.tile3.nc .........OK
+ Comparing phyf001.tile4.nc .........OK
+ Comparing phyf001.tile5.nc .........OK
+ Comparing phyf001.tile6.nc .........OK
+ Comparing dynf001.tile1.nc .........OK
+ Comparing dynf001.tile2.nc .........OK
+ Comparing dynf001.tile3.nc .........OK
+ Comparing dynf001.tile4.nc .........OK
+ Comparing dynf001.tile5.nc .........OK
+ Comparing dynf001.tile6.nc .........OK
+ Comparing RESTART/coupler.res .........OK
+ Comparing RESTART/fv_core.res.nc .........OK
+ Comparing RESTART/fv_core.res.tile1.nc .........OK
+ Comparing RESTART/fv_core.res.tile2.nc .........OK
+ Comparing RESTART/fv_core.res.tile3.nc .........OK
+ Comparing RESTART/fv_core.res.tile4.nc .........OK
+ Comparing RESTART/fv_core.res.tile5.nc .........OK
+ Comparing RESTART/fv_core.res.tile6.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile1.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile2.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile3.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile4.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile5.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile6.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile1.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile2.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile3.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile4.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile5.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile6.nc .........OK
+ Comparing RESTART/phy_data.tile1.nc .........OK
+ Comparing RESTART/phy_data.tile2.nc .........OK
+ Comparing RESTART/phy_data.tile3.nc .........OK
+ Comparing RESTART/phy_data.tile4.nc .........OK
+ Comparing RESTART/phy_data.tile5.nc .........OK
+ Comparing RESTART/phy_data.tile6.nc .........OK
+ Comparing RESTART/sfc_data.tile1.nc .........OK
+ Comparing RESTART/sfc_data.tile2.nc .........OK
+ Comparing RESTART/sfc_data.tile3.nc .........OK
+ Comparing RESTART/sfc_data.tile4.nc .........OK
+ Comparing RESTART/sfc_data.tile5.nc .........OK
+ Comparing RESTART/sfc_data.tile6.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile1.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile2.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile3.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile4.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile5.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile6.nc .........OK
+ Comparing mediator_FBaccumOcn_restart.nc .........OK
+ Comparing mediator_FBaccumIce_restart.nc .........OK
+ Comparing mediator_FBaccumLnd_restart.nc .........OK
+ Comparing mediator_FBaccumHyd_restart.nc .........OK
+ Comparing mediator_FBaccumAtmOcn_restart.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile1.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile2.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile3.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile4.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile5.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile6.nc .........OK
+ Comparing mediator_FBIce_i_restart.nc .........OK
+ Comparing mediator_FBOcn_o_restart.nc .........OK
+ Comparing mediator_FBLnd_l_restart.nc .........OK
+ Comparing mediator_FBHyd_h_restart.nc .........OK
+ Comparing mediator_FBAtmOcn_o_restart.nc .........OK
+Test 001 cpld_fv3_mom6_cice_cold_atm_flux PASS
+
+
+baseline dir = /scratch1/NCEPDEV/stmp4/Minsuk.Ji/S2S_RT/REGRESSION_TEST/RT-Baselines_2d_warm
+mediator baseline dir = /scratch1/NCEPDEV/stmp4/Minsuk.Ji/S2S_RT/REGRESSION_TEST/RT-Baselines_2d_warm/RESTART
+working dir  = /scratch1/NCEPDEV/stmp2/Minsuk.Ji/S2S_RT/rt_246089/cpld_fv3_mom6_cice_2d_atm_flux
+Checking test 002 cpld_fv3_mom6_cice_2d_atm_flux results ....
+ Comparing phyf048.tile1.nc .........OK
+ Comparing phyf048.tile2.nc .........OK
+ Comparing phyf048.tile3.nc .........OK
+ Comparing phyf048.tile4.nc .........OK
+ Comparing phyf048.tile5.nc .........OK
+ Comparing phyf048.tile6.nc .........OK
+ Comparing dynf048.tile1.nc .........OK
+ Comparing dynf048.tile2.nc .........OK
+ Comparing dynf048.tile3.nc .........OK
+ Comparing dynf048.tile4.nc .........OK
+ Comparing dynf048.tile5.nc .........OK
+ Comparing dynf048.tile6.nc .........OK
+ Comparing RESTART/coupler.res .........OK
+ Comparing RESTART/fv_core.res.nc .........OK
+ Comparing RESTART/fv_core.res.tile1.nc .........OK
+ Comparing RESTART/fv_core.res.tile2.nc .........OK
+ Comparing RESTART/fv_core.res.tile3.nc .........OK
+ Comparing RESTART/fv_core.res.tile4.nc .........OK
+ Comparing RESTART/fv_core.res.tile5.nc .........OK
+ Comparing RESTART/fv_core.res.tile6.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile1.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile2.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile3.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile4.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile5.nc .........OK
+ Comparing RESTART/fv_srf_wnd.res.tile6.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile1.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile2.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile3.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile4.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile5.nc .........OK
+ Comparing RESTART/fv_tracer.res.tile6.nc .........OK
+ Comparing RESTART/phy_data.tile1.nc .........OK
+ Comparing RESTART/phy_data.tile2.nc .........OK
+ Comparing RESTART/phy_data.tile3.nc .........OK
+ Comparing RESTART/phy_data.tile4.nc .........OK
+ Comparing RESTART/phy_data.tile5.nc .........OK
+ Comparing RESTART/phy_data.tile6.nc .........OK
+ Comparing RESTART/sfc_data.tile1.nc .........OK
+ Comparing RESTART/sfc_data.tile2.nc .........OK
+ Comparing RESTART/sfc_data.tile3.nc .........OK
+ Comparing RESTART/sfc_data.tile4.nc .........OK
+ Comparing RESTART/sfc_data.tile5.nc .........OK
+ Comparing RESTART/sfc_data.tile6.nc .........OK
+ Comparing MOM6_RESTART/MOM.res.nc .........OK
+ Comparing MOM6_RESTART/MOM.res_1.nc .........OK
+ Comparing MOM6_RESTART/MOM.res_2.nc .........OK
+ Comparing MOM6_RESTART/MOM.res_3.nc .........OK
+ Comparing restart/iced.2016-10-05-00000.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile1.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile2.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile3.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile4.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile5.nc .........OK
+ Comparing mediator_FBaccumAtm_restart.tile6.nc .........OK
+ Comparing mediator_FBaccumOcn_restart.nc .........OK
+ Comparing mediator_FBaccumIce_restart.nc .........OK
+ Comparing mediator_FBaccumLnd_restart.nc .........OK
+ Comparing mediator_FBaccumHyd_restart.nc .........OK
+ Comparing mediator_FBaccumAtmOcn_restart.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile1.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile2.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile3.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile4.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile5.nc .........OK
+ Comparing mediator_FBAtm_a_restart.tile6.nc .........OK
+ Comparing mediator_FBIce_i_restart.nc .........OK
+ Comparing mediator_FBOcn_o_restart.nc .........OK
+ Comparing mediator_FBLnd_l_restart.nc .........OK
+ Comparing mediator_FBHyd_h_restart.nc .........OK
+ Comparing mediator_FBAtmOcn_o_restart.nc .........OK
+Test 002 cpld_fv3_mom6_cice_2d_atm_flux PASS
+
+
+REGRESSION TEST WAS SUCCESSFUL
+Tue Apr 21 20:20:36 UTC 2020
+Elapsed time: 00h:58m:45s. Have a nice day!

tests/atparse.bash

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+#! /usr/bin/env bash
+function atparse {
+    local __set_x
+    [ -o xtrace ] && __set_x='set -x' || __set_x='set +x'
+    set +x
+    # Use __ in names to avoid clashing with variables in {var} blocks.
+    local __text __before __after __during
+    for __text in "$@" ; do
+        if [[ $__text =~ ^([a-zA-Z][a-zA-Z0-9_]*)=(.*)$ ]] ; then
+            eval "local ${BASH_REMATCH[1]}"
+            eval "${BASH_REMATCH[1]}="'"${BASH_REMATCH[2]}"'
+        else
+            echo "ERROR: Ignoring invalid argument $__text\n" 1>&2
+        fi
+    done
+    while IFS= read -r __text ; do
+        while [[ "$__text" =~ ^([^@]*)(@\[[a-zA-Z_][a-zA-Z_0-9]*\]|@\[\'[^\']*\'\]|@\[@\]|@)(.*) ]] ; do
+            __before="${BASH_REMATCH[1]}"
+            __during="${BASH_REMATCH[2]}"
+            __after="${BASH_REMATCH[3]}"
+#            printf 'PARSE[%s|%s|%s]\n' "$__before" "$__during" "$__after"
+            printf %s "$__before"
+            if [[ "$__during" =~ ^@\[\'(.*)\'\]$ ]] ; then
+                printf %s "${BASH_REMATCH[1]}"
+            elif [[ "$__during" == '@[@]' ]] ; then
+                printf @
+            elif [[ "$__during" =~ ^@\[([a-zA-Z_][a-zA-Z_0-9]*)\] ]] ; then
+                eval 'printf %s "$'"${BASH_REMATCH[1]}"'"'
+            else
+                printf '%s' "$__during"
+            fi
+            if [[ "$__after" == "$__text" ]] ; then
+                break
+            fi
+            __text="$__after"
+        done
+        printf '%s\n' "$__text"
+    done
+    eval "$__set_x"
+}
+
+function test_atparse {
+    # Note that these cannot be local since they will be invisible
+    # to atparse:
+    testvar='[testvar]'
+    var1='[var1]'
+    var2='[var2]'
+    cat<<\EOF | atparse var3='**'
+Nothing special here. = @['Nothing special here.']
+[testvar] = @[testvar]
+[var1] [var2] = @[var1] @[var2]
+** = @[var3]
+@ = @[@] = @['@']
+-n
+ eval "export PE$c=\${PE$c:-0}" = @[' eval "export PE$c=\${PE$c:-0}"']
+EOF
+    echo "After block, \$var3 = \"$var3\" should be empty"
+}

tests/compile.sh

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+#!/bin/bash
+set -eux
+
+SECONDS=0
+
+if [[ $# -lt 1 ]]; then
+  echo "Usage: $0 app_name [ build_nr ] [ clean_before ] [ clean_after ]"
+  exit 1
+fi
+
+readonly app_name=$1
+readonly build_name=fv3_mom6_cice_${2:-0}
+readonly clean_before=${3:-YES}
+readonly clean_after=${4:-YES}
+
+hostname
+
+readonly compile_root_dir=$(cd "$(dirname "$0")" && pwd -P )
+PATHTR=${PATHTR:-$(cd ${compile_root_dir}/.. && pwd)}
+echo "PATHTR is $PATHTR"
+cd ${PATHTR}/NEMS
+
+if [[ ${clean_before} == YES ]]; then
+  make app=${app_name} distclean
+fi
+
+make app=${app_name} build
+
+if [[ ${clean_after} == YES ]]; then
+  make app=${app_name} clean
+fi
+
+cp ${PATHTR}/NEMS/exe/NEMS.x ${PATHTR}/tests/${build_name}.exe
+cp ${PATHTR}/NEMS/src/conf/modules.nems ${PATHTR}/tests/modules.${build_name}
+
+elapsed=$SECONDS
+echo "Elapsed time $elapsed seconds. Compiling ${app_name} finished"