Workflows install and cache dependencies, use poetry (#83)

* Update workflows to install package dependencies like numpy for use in tests * Cache installed dependencies so that future runs are faster * Upgrade setup-python to v4 from v3
JoFrhwld · Oct 17, 2022 · 25d7563 · 25d7563
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diff --git a/.github/workflows/test-and-run.yml b/.github/workflows/test-and-run.yml
@@ -19,20 +19,24 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
     - uses: actions/checkout@v3
+    - name: Install poetry
+      run: pipx install poetry
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
+        cache: 'poetry'
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        python -m pip install flake8 pytest
+        poetry env use "${{ matrix.python-version }}"
+        poetry install
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
-        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+        poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
-        python -m pytest tests/
+        poetry run pytest tests/
diff --git a/docs/_build/doctrees/code/align/aligner.doctree b/docs/_build/doctrees/code/align/aligner.doctree
diff --git a/docs/_build/doctrees/code/align/index.doctree b/docs/_build/doctrees/code/align/index.doctree
diff --git a/docs/_build/doctrees/code/align/transcriptprocessor.doctree b/docs/_build/doctrees/code/align/transcriptprocessor.doctree
diff --git a/docs/_build/doctrees/code/cmudictionary.doctree b/docs/_build/doctrees/code/cmudictionary.doctree
diff --git a/docs/_build/doctrees/code/extract/esps.doctree b/docs/_build/doctrees/code/extract/esps.doctree
diff --git a/docs/_build/doctrees/code/extract/index.doctree b/docs/_build/doctrees/code/extract/index.doctree
diff --git a/docs/_build/doctrees/code/extract/mahalanobis.doctree b/docs/_build/doctrees/code/extract/mahalanobis.doctree
diff --git a/docs/_build/doctrees/code/extract/plotnik.doctree b/docs/_build/doctrees/code/extract/plotnik.doctree
diff --git a/docs/_build/doctrees/code/extract/remeasure.doctree b/docs/_build/doctrees/code/extract/remeasure.doctree
diff --git a/docs/_build/doctrees/code/extract/vowel.doctree b/docs/_build/doctrees/code/extract/vowel.doctree
diff --git a/docs/_build/doctrees/code/praat.doctree b/docs/_build/doctrees/code/praat.doctree
diff --git a/docs/_build/doctrees/environment.pickle b/docs/_build/doctrees/environment.pickle
diff --git a/docs/_build/doctrees/index.doctree b/docs/_build/doctrees/index.doctree
diff --git a/docs/_build/doctrees/usage/installation.doctree b/docs/_build/doctrees/usage/installation.doctree
diff --git a/docs/_build/doctrees/usage/quickstart.doctree b/docs/_build/doctrees/usage/quickstart.doctree
diff --git a/docs/_build/html/.buildinfo b/docs/_build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: a9e501948c645bf032c7e86e32c92cb5
+config: 8745e4e4f0df8712ab397deb6ddc5d88
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/_build/html/_static/documentation_options.js b/docs/_build/html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '2.0.1',
+    VERSION: '2.0.2-dev',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/_build/html/code/align/aligner.html b/docs/_build/html/code/align/aligner.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>FAVE Aligner module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</title>
+    <title>FAVE Aligner module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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@@ -40,7 +40,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="index.html" title="FAVE Align module"
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-        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module documentation</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">FAVE Align module</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">FAVE Aligner module</a></li> 
@@ -128,7 +128,7 @@ <h4>Next topic</h4>
   <div role="note" aria-label="source link">
     <h3>This Page</h3>
     <ul class="this-page-menu">
-      <li><a href="../../_sources/code/align/aligner.rst.txt"
+      <li><a href="../../_sources/code/align/aligner.md.txt"
             rel="nofollow">Show Source</a></li>
     </ul>
    </div>
@@ -161,7 +161,7 @@ <h3>Navigation</h3>
         <li class="right" >
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              >previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module documentation</a> &#187;</li>
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         <li class="nav-item nav-item-this"><a href="">FAVE Aligner module</a></li> 

diff --git a/docs/_build/html/code/align/index.html b/docs/_build/html/code/align/index.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>FAVE Align module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</title>
+    <title>FAVE Align module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../_static/pyramid.css" />
     <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
@@ -40,7 +40,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../index.html" title="Module documentation"
              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module documentation</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">FAVE Align module</a></li> 
       </ul>
@@ -83,7 +83,7 @@ <h4>Next topic</h4>
   <div role="note" aria-label="source link">
     <h3>This Page</h3>
     <ul class="this-page-menu">
-      <li><a href="../../_sources/code/align/index.rst.txt"
+      <li><a href="../../_sources/code/align/index.md.txt"
             rel="nofollow">Show Source</a></li>
     </ul>
    </div>
@@ -116,7 +116,7 @@ <h3>Navigation</h3>
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              >previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module documentation</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">FAVE Align module</a></li> 
       </ul>

diff --git a/docs/_build/html/code/align/transcriptprocessor.html b/docs/_build/html/code/align/transcriptprocessor.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>FAVE TranscriptProcessor module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</title>
+    <title>FAVE TranscriptProcessor module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../_static/pyramid.css" />
     <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
@@ -40,7 +40,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="aligner.html" title="FAVE Aligner module"
              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module documentation</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="index.html" accesskey="U">FAVE Align module</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">FAVE TranscriptProcessor module</a></li> 
@@ -124,7 +124,7 @@ <h4>Next topic</h4>
   <div role="note" aria-label="source link">
     <h3>This Page</h3>
     <ul class="this-page-menu">
-      <li><a href="../../_sources/code/align/transcriptprocessor.rst.txt"
+      <li><a href="../../_sources/code/align/transcriptprocessor.md.txt"
             rel="nofollow">Show Source</a></li>
     </ul>
    </div>
@@ -157,7 +157,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="aligner.html" title="FAVE Aligner module"
              >previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module documentation</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="index.html" >FAVE Align module</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">FAVE TranscriptProcessor module</a></li> 

diff --git a/docs/_build/html/code/cmudictionary.html b/docs/_build/html/code/cmudictionary.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>FAVE CMU Dictionary module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</title>
+    <title>FAVE CMU Dictionary module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../_static/pyramid.css" />
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@@ -40,7 +40,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="extract/vowel.html" title="FAVE Vowel module"
              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="index.html" accesskey="U">Module documentation</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">FAVE CMU Dictionary module</a></li> 
       </ul>
@@ -154,7 +154,7 @@ <h4>Next topic</h4>
   <div role="note" aria-label="source link">
     <h3>This Page</h3>
     <ul class="this-page-menu">
-      <li><a href="../_sources/code/cmudictionary.rst.txt"
+      <li><a href="../_sources/code/cmudictionary.md.txt"
             rel="nofollow">Show Source</a></li>
     </ul>
    </div>
@@ -187,7 +187,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="extract/vowel.html" title="FAVE Vowel module"
              >previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="index.html" >Module documentation</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">FAVE CMU Dictionary module</a></li> 
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diff --git a/docs/_build/html/code/extract/esps.html b/docs/_build/html/code/extract/esps.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>FAVE esps module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</title>
+    <title>FAVE esps module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../_static/pyramid.css" />
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@@ -40,7 +40,7 @@ <h3>Navigation</h3>
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              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
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         <li class="nav-item nav-item-this"><a href="">FAVE esps module</a></li> 
@@ -82,7 +82,7 @@ <h4>Next topic</h4>
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+      <li><a href="../../_sources/code/extract/esps.md.txt"
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@@ -115,7 +115,7 @@ <h3>Navigation</h3>
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-        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module documentation</a> &#187;</li>
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diff --git a/docs/_build/html/code/extract/index.html b/docs/_build/html/code/extract/index.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>FAVE Extract module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</title>
+    <title>FAVE Extract module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
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              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module documentation</a> &#187;</li>
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@@ -86,7 +86,7 @@ <h4>Next topic</h4>
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+      <li><a href="../../_sources/code/extract/index.md.txt"
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+        <li class="nav-item nav-item-0"><a href="../../index.html">Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</a> &#187;</li>
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diff --git a/docs/_build/html/code/extract/mahalanobis.html b/docs/_build/html/code/extract/mahalanobis.html
@@ -6,7 +6,7 @@
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-    <title>FAVE Mahalanobis module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.1 documentation</title>
+    <title>FAVE Mahalanobis module &#8212; Forced Alignment and Vowel Extraction (FAVE) 2.0.2-dev documentation</title>
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